Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq20 87.8 9e-13 seq17 86.0 3e-12 seq10 82.4 4e-11 >seq20 Length=69342659 Score = 87.8 bits (96), Expect = 9e-13 Identities = 75/93 (81%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCA----AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||||||| | || |||||| | |||||||||| ||||||| ||||||||| Sbjct 27380777 AATAAAAAATAATTACAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTA 27380836 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| |||||||||||||| |||| Sbjct 27380837 GCACCACGCTCTAACCAACTGAGCTAACCGGCC 27380869 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| || | |||||| | |||||||||| ||||||| ||||||||||||| | Sbjct 27274665 AAAAAAAAAAGTGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCA 27274724 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||| |||| Sbjct 27274725 CGCTCTAACCAACTGAGCTAACCGGCC 27274751 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 25199200 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 25199259 Query 11528 CC 11529 || Sbjct 25199260 CC 25199261 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 25336671 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 25336612 Query 11528 CC 11529 || Sbjct 25336611 CC 25336610 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 27277472 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 27277531 Query 11528 CC 11529 || Sbjct 27277532 CC 27277533 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 27339385 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 27339326 Query 11528 CC 11529 || Sbjct 27339325 CC 27339324 >seq17 Length=88915856 Score = 86.0 bits (94), Expect = 3e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| || ||||||| | |||||||||| ||||||| ||||||||||||| |||| Sbjct 36885456 AAAAACACTTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 36885397 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||| |||| Sbjct 36885396 TCTAACCAACTGAGCTAACCGGCC 36885373 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 36910165 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 36910224 Query 11528 CC 11529 || Sbjct 36910225 CC 36910226 >seq10 Length=113323912 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 104876121 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 104876062 Query 11528 CC 11529 || Sbjct 104876061 CC 104876060 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261482974549156