Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq8 105 7e-18 >seq8 Length=167013402 Score = 105 bits (116), Expect = 7e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 10137 TCAAGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAG 10196 || |||| ||| |||| || || ||| | || |||||||||||||||||||||| |||| Sbjct 105296521 TCTAGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAG 105296580 Query 10197 TAATGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCG 10256 | ||||| || || || || || | ||| | ||| ||||| |||| || ||||| | Sbjct 105296581 TGATGCCCCAAGCAGAGAAGCATGGCCCGGAAATCAAGGAGCATTTGAATTCCCTGGGAG 105296640 Query 10257 AGAATCTAAAGACCCTAAGGCTTCGCTTGCG 10287 |||| || |||||||| ||| | || |||| Sbjct 105296641 AGAAGCTGAAGACCCTCAGGATGCGGCTGCG 105296671 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||| ||||||| |||||||||||| || || |||| | Sbjct 105298782 AGCTCCAAGACAAAGGCGTCTACAAGGCCATGAATGAATTTGACATCTTCATCAACTGCA 105298841 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||||||||||| || ||||| Sbjct 105298842 TAGAAGCATACATGAAGATCAAAAT 105298866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547361540178560