Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq4 152 7e-32 seq8 138 2e-27 >seq4 Length=164141553 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| ||| || ||||| ||||||||||||||||| | ||||| |||||| ||| Sbjct 23565535 AAGCCCATGTCACCACCGAACGTGCTGGGTTTCCAGTACTCTGGGGAACAGATGGGATTC 23565476 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| ||||||||||| |||||||||| ||| | || || || || |||||| Sbjct 23565475 CCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCCATCTCTATCATACTTTCCCCAAAGATG 23565416 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || ||| |||| || || || | ||| ||||| | ||| || ||||| Sbjct 23565415 GAGTTGGGCTGGCACTTCTCCAGCAGCAACCCTGGGTAGAACTCTAAAGCATCAATGTCA 23565356 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||||| || || | || || || || ||||| |||||||| Sbjct 23565355 CCGTACAGCTCCTCCAACTCAGCGGCCATCTCCTTCTCTCCTGT 23565312 >seq8 Length=167013402 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| |||| || || ||||| || || ||| || ||||| || |||| || Sbjct 123224945 ATGAGTCTGCTGGTTTGGAATAGTTGCTCATCCTCCCACTCAGGATGCTCCTGTTTGAGG 123224886 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || |||||||||||||| |||| |||||||| ||||| |||||||| ||||||||| Sbjct 123224885 ATGTCACACACTCTGTTGTGCTCCCGAAGCCAGATGGTAGCATACATCATCAGACCAGGC 123224826 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| | || || || ||||| | | | || || || | | ||||| Sbjct 123224825 ACCAGACCAAAGACTTCCTGCCCCACAGCAAACTGTAGGTTCTCAGGGATGTGAGGAGGG 123224766 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||||| | ||||| |||||||| | ||| ||||||| || || |||| Sbjct 123224765 TAGATCATCTCTACCTGAGTGTCTTTGACTGTGGGAGGATACACCTCTCCACCAAT 123224710 Score = 120 bits (132), Expect = 4e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| |||| || |||||| | || || ||| || |||| || || || Sbjct 123190919 ATGAGTCTGCTGGTTTGGAACAGTCGCTCATCCTCCCACTCAGGATACTCCTCCTTGAGT 123190860 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || |||||||||||||| |||| |||||||| ||||| |||||||| ||||||||| Sbjct 123190859 ATGTCACACACTCTGTTGTGCTCCCGAAGCCAGATGGTAGCATACATCATCAGACCAGGC 123190800 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| | || || || ||||| | | | || || || | | ||||| Sbjct 123190799 ACCAGACCAAAGACTTCCTGCCCCACAGCAAACTGTAGGTTCTCAGGGATGTGAGGAGGG 123190740 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||||| | ||||| ||| |||| | ||| ||||||| || || |||| Sbjct 123190739 TAGATCATCTCTACCTGAGTGTCTCTGACTGTGGGAGGATACACCTCTCCACCAAT 123190684 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 ||||| || || || | |||||||| || || | | || ||||| || ||| | | Sbjct 123222899 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACTGGAGGAAGGGCCCTGGTG 123222840 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||||||||||||||| |||||||||||| ||| | |||| | | ||||| | Sbjct 123222839 TAGTAGGAGAGATTGGAGAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTT 123222780 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||||| ||||| ||||| Sbjct 123222779 GGTGGACTGTCAATCAAATGTGATCTGGCTGAA 123222747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708501941218640