Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4 129 5e-25 seq9 120 3e-22 seq17 111 1e-19 seq1 105 6e-18 seq13 102 7e-17 seq28 86.0 6e-12 >seq4 Length=164141553 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | ||||| |||||||| | ||| || || || ||| | Sbjct 18056554 TCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCC 18056613 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| || || |||||||| |||||||| ||||| || Sbjct 18056614 ATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTT 18056673 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || || | |||||| Sbjct 18056674 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 18056733 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| ||||| || |||||||| |||||||| Sbjct 18056734 GGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | ||||| |||||||| | ||| || || || ||| | Sbjct 99334567 TCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCC 99334626 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| || || |||||||| |||||||| ||||| || Sbjct 99334627 ATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTT 99334686 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || || | |||||| Sbjct 99334687 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 99334746 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| ||||| || |||||||| |||||||| Sbjct 99334747 GGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | ||| | |||| ||| |||| | ||| || || || ||| | Sbjct 31007716 TCTCAACACAAGGTGAAGGATAGACTCCGTTTGAATGTTGTAGTCAGACAAAGTACAGCC 31007775 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| || || |||||||| ||| ||| ||||| || Sbjct 31007776 ATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAAGAAGTCCTTCATT 31007835 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 | | || || ||||| || | | |||||| | | | || | || | ||||| Sbjct 31007836 ATTCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAACTCGAGTGTGAT 31007895 Query 94972 GGTTTTTC-CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| | |||| || |||||||| |||||||| Sbjct 31007896 GGTTTTTCTCCATAAGGGTCTTCACAAATATCTGCAT 31007932 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||||||||| | | |||| || | || ||||| || || || || ||||| || Sbjct 149231695 ATCCTCCAGCTGTTTGCTGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTT 149231754 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || |||||||| ||| ||||| | | ||||| |||| ||||| Sbjct 149231755 GTCTTGGATCTTGGCCTTGACATTCTCGATGTTGTCACTGGGCTCGACCTCAAGAGTGAT 149231814 Query 94972 GGTTTTTCCAGTAAGAGTTTTCAC----AAAGATCTGCATG 95008 ||| || || || || || ||||| |||||||||||| Sbjct 149231815 GGTCTTGCCCGTCAGGGTCTTCACGAAGGAAGATCTGCATG 149231855 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATC 94854 || ||||| ||||| || || || || || | ||| || || || ||| | ||| Sbjct 128787398 CAGCACCAGTTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCAGCCATC 128787339 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 |||||||||||| || |||| || | || |||| || || || || ||||| ||||| Sbjct 128787338 CTCCAGCTGTTTGCC-TCAAATATCAGCCTCAGCTGGTCAGGTGGGATGCCTTCCTTGTC 128787280 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | || || |||||||| ||| |||||| | | || || |||| |||||||| Sbjct 128787279 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGT 128787220 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || | || || |||| ||||||| |||| Sbjct 128787219 CTTGCCCATCAGGGTCTTCAGGAAGATCTACATG 128787186 >seq9 Length=107150856 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||||| || || || || || | ||| || || | |||| | | Sbjct 80898456 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCA 80898515 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| |||||| ||| |||| || | || ||||| || || || || ||||| ||| Sbjct 80898516 TCCTCCACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTG 80898575 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| |||||| | | ||||| |||| |||||| Sbjct 80898576 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 80898635 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||| |||||||||||| Sbjct 80898636 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 80898671 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||||| || || || || || | ||| || || | |||| | | Sbjct 83841068 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCA 83841127 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 |||||||||||||| ||| | || || | || ||||| || || || || ||||| ||| Sbjct 83841128 TCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTG 83841187 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| |||||| | | ||||| |||| |||||| Sbjct 83841188 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 83841247 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||| |||||||||||| Sbjct 83841248 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 83841283 >seq17 Length=88915856 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||||| || || || || || ||| ||||| || ||| | | Sbjct 64219996 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGACAGGGTGCAGCCA 64220055 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 |||||||||||||| ||| |||| || | || ||||| || || || | ||||| ||| Sbjct 64220056 TCCTCCAGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCCTTG 64220115 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| || ||| | | || || |||| |||||| Sbjct 64220116 TCTTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCTACTTCAAGAGTGATG 64220175 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || | || || |||||||||||||||||| Sbjct 64220176 GTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATG 64220211 >seq1 Length=172151128 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 94792 TCGCAACACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG 94850 || |||| ||||| || | ||||| |||||||| | ||| || || ||| | Sbjct 144045277 TCTCAAC-CCAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGAAAGACAAAGTACGGC 144045335 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||||||| || || ||||||| ||||| |||| ||| |||||||| ||||| | Sbjct 144045336 CATCTTCCAGCTGCTTACCCGCAAAGATCAATCTCTGCTCATCAGGAGGAATTCCTTCCT 144045395 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | || || ||||| || | | |||||| | | | || || | | | ||| Sbjct 144045396 TATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCTTGA 144045455 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||| |||| || |||||||| |||||||| Sbjct 144045456 TGGTTTTTCCCGTAAAGGTCTTCACAAAAATCTGCAT 144045492 >seq13 Length=116904986 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATC 94854 || ||||| || ||| || || || || || | ||| || | || ||| | ||| Sbjct 35782744 CAGCACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTGCAACAGGGTGCGGCCATC 35782803 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 |||||||| ||| | | |||| || | || ||||| || || || || ||||| ||||| Sbjct 35782804 CTCCAGCTCTTTGCTGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTC 35782863 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | || || |||||||| ||| |||||| | | || || |||| |||||||| Sbjct 35782864 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGT 35782923 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || |||||||||||||||||| Sbjct 35782924 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 35782957 >seq28 Length=148379591 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 94801 CAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAG 94860 |||||||| || || || || || | ||| ||||| | ||| || ||| ||||| Sbjct 9098641 CAAGTGCAGGGTTGAGTCTTTCTGGATGTTGTAATCAGAGAGGGTGCTGCCATCTTCCAG 9098700 Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920 || || || |||| || | || | |||||| || ||||| ||||| || | || Sbjct 9098701 ATGCTTGCCTGCAAA-ATGAGCCTCTACTGATCAGGGGGAATGTACTCTTTATCCTGGAT 9098759 Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 || ||||| |||| ||| ||||||| | | || || || | |||||||| || || Sbjct 9098760 CTTGGCCTTCACGGTCTCGATAGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCC 9098819 Query 94981 AGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||||||||| ||||| Sbjct 9098820 GGTCAGGGTCTTCACAAAGATGTGCAT 9098846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448276737005160