Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20 163 4e-36 seq6 156 7e-34 seq2 136 6e-28 >seq20 Length=69342659 Score = 163 bits (180), Expect = 4e-36 Identities = 201/272 (74%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | | || ||||| ||||||||||| || ||||||||||| || | Sbjct 27623835 CGCTAAGCGCCACCGTAAGGTC-CTTCGTGATAACATCCAGGGCATCACCAAGCCCGCCA 27623777 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 27623776 TCCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 27623717 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| ||||| | ||||| ||| ||| |||| || ||| || ||| || | Sbjct 27623716 CCCGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACGG 27623657 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || | || || || | Sbjct 27623656 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 27623597 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | | ||||| || || ||||| || Sbjct 27623596 GCCGCACCCTCTATGGCTTCGGCGGTTAAGCT 27623565 Score = 154 bits (170), Expect = 2e-33 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | ||| || ||||||||||| || ||||||||||| || || Sbjct 27676699 CGCTAAGCGCCACCGCAAAGTTCTGCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 27676758 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 27676759 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 27676818 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 27676819 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 27676878 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 27676879 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 27676938 Query 16672 CCG 16674 ||| Sbjct 27676939 CCG 27676941 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | || || ||||||||||| || ||||||||||| || || Sbjct 27529341 CGCTAAGCGTCACCGTAAGGTACTCCGTGATAACATCCAGGGTATCACCAAGCCCGCCAT 27529400 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 27529401 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 27529460 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 27529461 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 27529520 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || |||||||| |||||| ||||||| | ||||| || | || || || || Sbjct 27529521 GCACGCCAAGCGTAAGACAGTCACCGCCATGGACGTTGTCTACGCGCTCAAGCGCCAGGG 27529580 Query 16672 CCG 16674 ||| Sbjct 27529581 CCG 27529583 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 25124500 CGCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 25124559 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 25124560 CCGCCGCCTGGCCCGGCGCGGAGGGGTAAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 25124619 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 25124620 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 25124679 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| || ||||| |||||| ||||||| | ||||| ||| | || || || || Sbjct 25124680 GCACGCTAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCACTCAAGCGCCAGGG 25124739 Query 16672 CCG 16674 ||| Sbjct 25124740 CCG 25124742 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || || || |||||||| || ||||||||||| |||||| Sbjct 25130258 GCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCTATC 25130199 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 25130198 CGCCGCCTGGCCCGGCGCGGAGGGGTAAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 25130139 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 25130138 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAG 25130079 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || ||||| |||||| ||||||| | ||||| || | || || || ||| Sbjct 25130078 CACGCTAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 25130019 Query 16673 CG 16674 || Sbjct 25130018 CG 25130017 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | ||| || || |||||||| || ||||||||||| || || Sbjct 27482310 CGCCAAGCGCCACCGTAAAGTTCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 27482369 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 27482370 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 27482429 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 27482430 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 27482489 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 27482490 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 27482549 Query 16672 CCG 16674 ||| Sbjct 27482550 CCG 27482552 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 27680819 CGCCAAGCGCCACCGCAAAGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 27680760 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 27680759 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 27680700 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 27680699 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 27680640 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 27680639 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 27680580 Query 16672 CCG 16674 ||| Sbjct 27680579 CCG 27680577 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 25047524 CGCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 25047583 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 25047584 CCGCCGCCTGGCCCGGCGCGGAGGGGTAAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 25047643 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 25047644 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 25047703 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 25047704 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 25047763 Query 16672 CCG 16674 ||| Sbjct 25047764 CCG 25047766 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 25061702 CGCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 25061643 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 25061642 CCGCCGCCTGGCCCGGCGCGGAGGGGTAAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 25061583 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 25061582 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 25061523 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 25061522 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 25061463 Query 16672 CCG 16674 ||| Sbjct 25061462 CCG 25061460 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | | || || |||||||| || ||||||||||| || || Sbjct 25347742 CGCCAAGCGCCACCGCAAAGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 25347683 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 25347682 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 25347623 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 25347622 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 25347563 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 25347562 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 25347503 Query 16672 CCG 16674 ||| Sbjct 25347502 CCG 25347500 >seq6 Length=146485248 Score = 156 bits (172), Expect = 7e-34 Identities = 182/243 (75%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||||||||| || || Sbjct 86460646 GCCAAGCGCCACCGCAAGGTC-CTGCGGGACAACATCCAGGGCATCACCAAGCCTGCCAT 86460588 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||| |||||||| ||||||| | |||| || |||| Sbjct 86460587 CCGCCGCCTGGCTCGGCGCGGTGGTGTCAAGCGCATCTCTGGTCTCATCTACGAGGAGAC 86460528 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 86460527 CCGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGCGACGCAGTCACCTACACTGA 86460468 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || | || || || || Sbjct 86460467 GCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTCAAGCGCCAGGG 86460408 Query 16672 CCG 16674 ||| Sbjct 86460407 CCG 86460405 >seq2 Length=163939365 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || ||||||||||| || || |||||||| |||| Sbjct 151744163 CGCCAAGCGACACCGCAAGGTC-CTCCGCGATAACATCCAGGGCATTACCAAGCCCGCTA 151744105 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 151744104 TCCGGCGGCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGTCTCATCTACGAGGAGA 151744045 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | |||| | ||| | ||||| ||| || |||| || || || ||| |||| Sbjct 151744044 CTCGCGGTGTTCTCAAGGTTTTCCTTGAGAATGTGATCCGCGACGCCGTCACCTACACCG 151743985 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| | ||||| | || || || | || || || | Sbjct 151743984 AGCACGCCAAGCGCAAGACGGTCACGGCTATGGACGTGGTGTACGCGCTCAAGCGCCAGG 151743925 Query 16671 GCCG 16674 |||| Sbjct 151743924 GCCG 151743921 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || ||||||||||| || || |||||||| |||| Sbjct 151781758 CGCCAAGCGACACCGCAAGGTC-CTCCGCGATAACATCCAGGGCATTACCAAGCCCGCTA 151781700 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 151781699 TCCGGCGGCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGTCTCATCTACGAGGAGA 151781640 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | |||| | ||| | ||||| ||| || |||| || || || ||| |||| Sbjct 151781639 CTCGCGGTGTTCTCAAGGTTTTCCTTGAGAATGTGATCCGCGACGCCGTCACCTACACCG 151781580 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| | ||||| | || || || | || || || | Sbjct 151781579 AGCACGCCAAGCGCAAGACGGTCACGGCTATGGACGTGGTGTACGCGCTCAAGCGCCAGG 151781520 Query 16671 GCCG 16674 |||| Sbjct 151781519 GCCG 151781516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072840173633