Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 4e-14 seq21 86.0 7e-12 >seq9 Length=107150856 Score = 93.3 bits (102), Expect = 4e-14 Identities = 174/252 (69%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCttttttt-GACATAATTCCC 21181 ||| ||| || |||||||| || | |||| ||| |||| | || ||| | | || | Sbjct 26404173 TTACTTAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTTATCAAATTCGACCTGACTCTC 26404232 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | || || || | ||| || || || || ||||||||||||| | ||| ||| Sbjct 26404233 ATCCTCTGCTACTCGCCTCCTCGCTTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATA 26404292 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||| || |||||||||||||| | | || || |||||| ||||||| || | Sbjct 26404293 TTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTATTAAAACCCAGCTC-CAG 26404351 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| || || || |||||||| | || || ||| || ||||||| | ||| Sbjct 26404352 CATAAGCCTGTCGGCCACAAATTCAAAGTACTGCTTCATCAAAGTGTAATTCATCCAGAT 26404411 Query 21361 CAATTTTACAGG 21372 | ||| ||||| Sbjct 26404412 GAGTTTCACAGG 26404423 >seq21 Length=68186955 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| ||||||||| ||| | ||| | | | | | Sbjct 4922197 TTTAGAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCGGCCATGACTGCAAATC 4922256 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| ||| ||||| ||| || || |||||||| || ||||| || || || | Sbjct 4922257 GCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAGGAAATGTTCT 4922316 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 4922317 CCATAAAATCAAAGGGATTTTC 4922338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531883639550440