Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 100 7e-16 seq10 84.2 6e-11 >seq1 Length=172151128 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| |||||||| || || |||| ||||| || || || || ||| Sbjct 73310292 GCTCAGCAGCTTTGGTACGCCATCATTGAGTCCCAGACGGAGACGGGTACCCCATACATG 73310351 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || ||||| ||| |||||||||| |||| || || || | Sbjct 73310352 CTCTACAAAGATTCCTGTAACCGGAAGAGCAACCAGCAGAACCTGGGGACCATCAAATGC 73310411 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| ||||| || || | || |||||| Sbjct 73310412 AGCAACCTGTGTACAGAAATAGTAGAGTACACC 73310444 >seq10 Length=113323912 Score = 84.2 bits (92), Expect = 6e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||| | || ||||| || ||||||||||| | ||| | || || ||||| Sbjct 23466325 GCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTC 23466384 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || ||||| | | | |||||||| || || ||||| |||||| | |||||| |||||||| Sbjct 23466385 AAGAAACGGGGACTGATGCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGATGAG 23466444 Query 22621 G 22621 | Sbjct 23466445 G 23466445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303310499318342