Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2 118 7e-22 seq11 109 4e-19 seq19 104 2e-17 seq2478 100 2e-16 seq9 98.7 7e-16 seq25 95.1 8e-15 seq17 91.5 1e-13 seq351 89.7 3e-13 >seq2 Length=163939365 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| | ||||| || Sbjct 139767922 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTAGGAATCTTGT 139767863 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | || |||||||||||||||||||||||||||| Sbjct 139767862 TCAACCATTCATGCGCGTCACTAATTAGATGACGA 139767828 >seq11 Length=111406228 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||| ||||||||||||||||| |||||||| ||||| || |||||| | Sbjct 106461814 AAGCCCATTCCTTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 106461873 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 106461874 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 106461908 >seq19 Length=82564344 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| || |||||||| ||||| || |||||| | Sbjct 60118469 AAGCCCATTCCCTTGGCTGTGGTTTCTCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 60118410 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| |||||||||||||||||| || Sbjct 60118409 TCATCCATTCATGTGCGTCACTAATTAGATGATGA 60118375 >seq2478 Length=66424 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| || || ||||| ||||| || |||||||| Sbjct 32282 AAGCCCGTTCCCTTGGCTGTGGTTTCACTGGACAGTAGGTAGGGACAGTGGGAATCTCGT 32341 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||| || |||| ||||||||||| Sbjct 32342 TCATCCCTTCATGAGCATCACGAATTAGATGAC 32374 >seq9 Length=107150856 Score = 98.7 bits (108), Expect = 7e-16 Identities = 77/92 (84%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 ||||||| |||||||||| |||||| || ||||||| ||||| || ||||||||| Sbjct 34824279 AGCCCGTGCCCTTGGCTGAGGTTTCACTGCATAGTAGGTAGGGACAGTGGGAATCTCGTT 34824338 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 || | |||||||||||||||||||||||||| Sbjct 34824339 CATACATTCATGCGCGTCACTAATTAGATGAC 34824370 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| ||||| || | ||| ||| || || || ||||| || || Sbjct 80898444 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 80898503 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | ||||| ||||||||||| || | || || || | ||| Sbjct 80898504 AGGGTGTGGCCATCCTCCACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 80898563 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || || ||| ||||||| || || || | || || Sbjct 80898564 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 80898623 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||||||| ||| |||||||| ||||||||||| Sbjct 80898624 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 80898673 >seq25 Length=55716805 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| || |||||||||||||| ||||| | ||| || || ||||||||||| Sbjct 17884983 AAGCCTCTTTTCTTGGCTGTGGTTTTACTAGACAATAGGTATGGATAGTGGTAATCTCGT 17884924 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 17884923 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 17884889 >seq17 Length=88915856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| ||||| || | ||| ||| || || | |||||||||||| Sbjct 64219984 CCACCCCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGAC 64220043 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | ||||| ||||||||||| || | || || || | ||| Sbjct 64220044 AGGGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 64220103 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || || ||| ||||||| || ||||| | || ||| Sbjct 64220104 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCTACT 64220163 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||| ||| ||| ||||| || ||||||||||| Sbjct 64220164 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 64220213 >seq351 Length=10747 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 9114 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTACTTGTTGAATATCGGTCTCCT 9173 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 9174 GCCGGTATTTAGCCTTA 9190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334936663921811