Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1997 268 1e-66 seq9 237 2e-57 seq1 131 2e-25 seq10 122 1e-22 seq21 111 2e-19 >seq1997 Length=85722 Score = 268 bits (296), Expect = 1e-66 Identities = 597/889 (67%), Gaps = 13/889 (1%) Strand=Plus/Plus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| ||||||| | | | ||||| || | || || || || || || || ||| Sbjct 33352 GACATGGCTCCCATCCTCTTACACTCACCTACTCACTTCTCAAAGAAGTTTGTCTTTCCT 33411 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTA-ACATTATAAAtttttttAAA 32473 |||| ||| | ||||||| ||| || |||||||| | || | |||| || |||| Sbjct 33412 TCTAGTGAAACATTTTCCTTGACGTCAAATGGATTTTTCCACTCTGAAAATCTTGTTAAG 33471 Query 32474 TCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 32533 |||| || ||| || || | | |||||| || || ||||||| || Sbjct 33472 ACCCAGCTCCAGTGTCAGCCTGTCAGTCAAAAATTCAATGTACTGCTTCATCAAAGTGCA 33531 Query 32534 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 32593 |||| | || | || || || || | ||| || || || ||||| || || || Sbjct 33532 ATTCGTCCCGAAGAGCTTCACAGGCAAGGCCTTCGTGAGGAACTCTTGCTCTATCCTAAC 33591 Query 32594 CGCGTCTGTTATAATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAA 32652 || || || | || | ||||| ||| || || | | | | | | || || | Sbjct 33592 CGTGTTGGTGTTTATTTCTTTTACTCTTTGCTCCAATGGCTTG-TGTACCTGGTGCTTGA 33650 Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTA-CTAATTAATTCGTTGGAA 32711 ||||| | || || || ||||||| |||||||||||| ||||| | || |||||| Sbjct 33651 ACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAA 33710 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT-ATGGACGCAAATGATCC 32770 || || || || ||||| || | || || || ||||| | | || || ||||| || || Sbjct 33711 AATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACC 33770 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT-------AAC 32823 ||||||||| |||| ||| || |||||| | | || || |||||| || Sbjct 33771 AGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGTCCCCAAT 33830 Query 32824 CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 32883 | |||| ||||| ||||| || |||||||| || ||||||||||||| Sbjct 33831 TCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTG 33890 Query 32884 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 32943 | | |||||||| |||||||| | | |||| || |||||||| || || || || | Sbjct 33891 TTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAA 33950 Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003 ||||| |||||||| || | | ||| || ||||| ||||| || || ||||| || | Sbjct 33951 GGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGC 34010 Query 33004 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33063 ||||| |||| || |||||| | |||||| || | || |||||||| ||||| | Sbjct 34011 GGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGC 34070 Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 33123 | |||| ||||||||| |||| || || ||||| || | | || || ||| | Sbjct 34071 CACCACTCATTGCAAAAAA-GCCAGAACGTGAGATATAAGATGTCTCTCATCGGGTTTCT 34129 Query 33124 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 33183 | | ||||| | | ||| | || || || ||||| || || | |||||||| || | Sbjct 34130 GATCTTTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCAGTCCAAAAGGAGG 34189 Query 33184 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 33232 ||| || || || ||||| | || ||| ||||| |||| ||| ||||| Sbjct 34190 TCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATTCAATGGGAAA 34238 >seq9 Length=107150856 Score = 237 bits (262), Expect = 2e-57 Identities = 630/954 (66%), Gaps = 39/954 (4%) Strand=Plus/Plus Query 32315 TTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGA----GACATAACTCCCATTT 32370 ||| |||||| |||| | | ||| ||| |||| | | ||| | |||| ||| Sbjct 26404177 TTAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTTATCAAATTCGACCTGACTCTCATCC 26404236 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 | || || || || | || || || || || || || || |||| || ||| ||||||| Sbjct 26404237 TCTGCTACTCGCCTCCTCGCTTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATTTT 26404296 Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 32490 ||||||| || |||||||| || | |||| || ||||| |||| || || | Sbjct 26404297 CCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTATTAAAACCCAGCTCCAGCATAA 26404356 Query 32491 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 32550 || || || |||||||| | || ||||||| ||||||| | || |||| Sbjct 26404357 GCCTGTCGGCCACAAATTCAAAGTACTGCTTCATCAAAGTGTAATTCATCCAGATGAGTT 26404416 Query 32551 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 32610 | || || | ||| | || || | || || || ||| ||| | || || Sbjct 26404417 TCACAGGCAAGGCCTTGATGAGGAACGCCTGCTCTATCCTAACCACGTTGGCGATTATTT 26404476 Query 32611 ATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 32669 | || || | | ||| | | | | | | | || || || |||| || | || Sbjct 26404477 CTTTTCCTCTCTGCTTTGATGGCTTG-TGTACCAGGTGCTTGAAAATCAGGCAGACAAAG 26404535 Query 32670 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC--A 32727 || |||| || |||||||||||| ||||| | || |||| ||| || || || ||| | Sbjct 26404536 TCCCAGTATAAACCCTCGTCTCTGCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCTCA 26404595 Query 32728 TT----------AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 32777 || || || || || || ||||| ||| | ||||||| |||||||| Sbjct 26404596 TTGGAAAATGTAAGTCCCCGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAAAA 26404655 Query 32778 AAAA--TTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC--TGTC 32833 |||| || ||||||| | |||||||| | || ||| | ||| || | || |||| Sbjct 26404656 AAAAAATTGCTTCTACCTCGGCAAAGGCCACAACTCTTTGTCC----CCAGTGCATTGTC 26404711 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 |||| |||||||| || |||||||| |||||||||||| || ||||| Sbjct 26404712 CCCACTCCAAGGCAAGGCCCAATCAGCATTCTTTTT---ACAAGGCATTGTTTCAATAGC 26404768 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||| |||||||| | | |||| || ||||||| || || ||||| | ||||| || Sbjct 26404769 ATTGAAGAGATACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTA 26404828 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||||| || || |||||||| ||||| ||||| || || ||||| || | | ||| || Sbjct 26404829 TATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGT 26404888 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 || || |||||| | ||||| | | || |||||| | ||||| || |||| | Sbjct 26404889 AACTTGAACTTCTTGGCTGAATCGCT---CCAAGTTTTCACTGACTATGCCATCACACAC 26404945 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT---AGTTTATT 33130 |||||| || |||| || || ||||||| | | || ||| ||| || | | Sbjct 26404946 TGCAAAGAAAGCCAGAACGTGAGCAATAAAATGTCTCTC--ATGGGGTTCAAAGCT--TC 26405001 Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 ||| | | ||||| || || | ||||| | || | |||||||| || ||||| || Sbjct 26405002 CCAGTGCTGAATATCCTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGC 26405061 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 || || ||||| | |||||| ||||| || | ||| ||||| | | |||| || Sbjct 26405062 TTTCTTGTACATCTGCCAGATATCATGGTACTCAATGGGAAAGACAGCAAAGCT 26405115 >seq1 Length=172151128 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 ||||| ||||||| ||||| || || || || ||||||||||| || || |||| Sbjct 73311703 GATCCCTCATATGTTTCGTAGGGGCCACACTCCTTGGCTAGTTCACAGCTGGCTTCTAGG 73311644 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 || || |||||||||||||| ||||||| |||||||| || ||||| |||| ||| Sbjct 73311643 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 73311584 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 || ||||| | | ||| || || || |||||||| ||||| || ||||| || || || Sbjct 73311583 AAGGGATATCTCATGAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGC 73311524 Query 62603 CTATGTCTCTTATTAGA 62619 | ||| | ||||| || Sbjct 73311523 CGATGGCGTTTATTTGA 73311507 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 73314775 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 73314716 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| ||| ||||| ||||| ||||| ||||| || || | | |||| Sbjct 73314715 GACTCATTATTCCCCAGAATCTGAGCCGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 73314656 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 73314655 CTGTTTCTTATACCATA 73314639 Score = 114 bits (126), Expect = 2e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| || || || |||||||| || || || |||| Sbjct 73299686 CACTGAACACTTTCTTTGTTTCTTTGTGCAGGTTAGAGACGGCTATCCTTGCTGCCAGAA 73299627 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | || || | || || ||| | || || ||||| ||||||| Sbjct 73299626 TGGCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCA 73299567 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| |||| | |||||||| || ||||| Sbjct 73299566 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCAT 73299521 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | ||||| || || ||||||||||| || ||||||||||| ||| Sbjct 73304315 GTGCCAGCATTGAAGAGAGTAGGGGAGGCATGAGTAAACCACTTCTCAGAAAGTAGGTTG 73304256 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || ||||| || | || ||||| | || |||||||| || | || | ||| | | Sbjct 73304255 TAGGTTTCAATTGCAGCATCAATATCTCCTTTGTGAATTCCCACAGAAACCCTCATCAGC 73304196 Query 63587 ATGTGCTGAGGTCTTTCA 63604 || ||||| ||||||||| Sbjct 73304195 ATATGCTGTGGTCTTTCA 73304178 >seq10 Length=113323912 Score = 122 bits (134), Expect = 1e-22 Identities = 118/151 (78%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 32671 CGCAGTGTAGAC---CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 ||||| ||||| |||| ||||| ||||| | || |||||||| || || || |||| Sbjct 23466460 CGCAGGTTAGACTCACCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCA 23466401 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 32787 | || || || || || ||||| ||||| || ||||| || ||||||||||| ||||||| Sbjct 23466400 TCAGTCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTT 23466341 Query 32788 CTACTGCCGCAAAGGCAATAAGTCTCTCTCC 32818 |||| || |||||||| | || || |||||| Sbjct 23466340 CTACGGCGGCAAAGGCCACAACTCGCTCTCC 23466310 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 ||||||| || || ||||| | |||||||||||||| || || |||||||| ||||| Sbjct 23465332 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCA 23465273 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || || ||||| || | ||||| |||| || |||||| | |||||| || Sbjct 23465272 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTC 23465214 >seq21 Length=68186955 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || || || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 4933595 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 4933654 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | |||||||||||||| ||||||||||||||||| || |||||||| Sbjct 4933655 AGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 4933713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633611557447600