Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1997 241 1e-58 seq9 179 4e-40 seq10 98.7 1e-15 >seq1997 Length=85722 Score = 241 bits (266), Expect = 1e-58 Identities = 536/795 (67%), Gaps = 21/795 (3%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || |||| | |||||| |||||||| ||||||| |||||| | || ||||| | Sbjct 33491 CTGTCAGTCAAAAATTCAATGTACTGCTTCATCAAAGTGCAATTCGTCCC--GAAGAGCT 33548 Query 92984 --ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTT 93041 ||||| | || | || | ||| |||| ||| || ||| | | | |||| Sbjct 33549 TCACAGGCAAGGCCTTCGTGAGGAACTCTTGCTCTATCCTAACCGTGTTGGTGTTTATTT 33608 Query 93042 CTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 || ||||||| | ||| || ||||| | ||| |||| || ||||||| Sbjct 33609 CTTTTACTCTTTGCTCCAATGGCTTGTGTACCTGGTGCTTGAACATCGGGCGGGCAAAGT 33668 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGGTAAC 93160 | |||||||| ||||||| || || || ||||||| ||||| | ||||| | | Sbjct 33669 CCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAAAATGTAAGGCCTGGCATC 33728 Query 93161 AGTCCTCGTTTCTTGAGCCAAAAT-ATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 || | || ||||||||||| | | || || |||||| ||||||||| || || | ||| Sbjct 33729 AGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACCAGAAAAGAAGATTCTTTC 33788 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG-------A 93272 ||| ||||| |||||| | ||| ||| | | | |||| || || | Sbjct 33789 CACCATGGCAAAGACCACAACTCATTCTCCAA--TGTCCCCAATT-CTCCTTGTCCCCAA 33845 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 |||| || ||||| || || || ||||| | |||||| | ||||| ||||| || | Sbjct 33846 TCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATAGCATTGA 33905 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || || |||| || | | |||| ||||| || || || | ||| ||||||| Sbjct 33906 AGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAAGGAGACTGTACATTT 33965 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 |||| | || |||||||| ||||||||||| || |||||||| | || || || | | Sbjct 33966 CAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTT 34025 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 | |||||||| ||||| ||| || | |||||||||||||| ||| | ||| | Sbjct 34026 GAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCACCACTCATTGC-A 34084 Query 93513 aaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA--ATC 93570 ||||||||| | || ||||| |||| ||||||| ||| | | | ||| | Sbjct 34085 AAAAAGCCAGAACGTGAGATATAAGATGTCTCTCATCGGGTTTCTGATCTTTCCAGTGTT 34144 Query 93571 GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTT 93630 | |||| | || |||| || || || ||| |||||||||| || | || ||||| || Sbjct 34145 GAATAG--CCTTGGAAATGTCCACCTCCTCGGCAGTCCAAAAGGAGGTCTCAGCTTTCTT 34202 Query 93631 GTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 |||||| | || || || || |||| ||| ||||| | | || || ||| || || Sbjct 34203 GTACATTTGCCTGATATCATGGTATTCAATGGGAAAGACAAGGAAGCGGCGAGGATTTTC 34262 Query 93691 TTTTAGTAACGGCTC 93705 | | ||||| ||||| Sbjct 34263 TCTCAGTAATGGCTC 34277 >seq9 Length=107150856 Score = 179 bits (198), Expect = 4e-40 Identities = 433/646 (67%), Gaps = 32/646 (5%) Strand=Plus/Plus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| || |||| |||| ||| || ||||| | | ||| | || | ||| || Sbjct 26404473 ATTTCTTTTCCTCTCTGCTTTGATGGCTTGTGTACCAGGTGCTTGAAAATCAGGCAGACA 26404532 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGG 93156 ||||| | |||||| ||||||| || || || ||||||| ||||| | ||||| Sbjct 26404533 AAGTCCCAGTATAAACCCTCGTCTC-TGCTAATAAGCTCATTGGGAAATGTAAGGCCTGG 26404591 Query 93157 T---------AAC---AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGa 93204 || ||||| |||||||||||||| ||| | ||||| |||||| Sbjct 26404592 CTCATTGGAAAATGTAAGTCCCCGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGA 26404651 Query 93205 aaaaaaTATAC--CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 |||||| | | |||| || | ||||| ||||||| | || | | | | | Sbjct 26404652 AAAAAAAAAATTGCTTCTACCTCGGCAAAGGCCACAACTCTTTGTCCCCAGT-----GCA 26404706 Query 93263 TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 || | |||| || |||||||| || || || ||| ||||| | |||||| Sbjct 26404707 TTGTCCCCACTCCAAGGCAAGGCCCAATCAGCATTCTTTTTA---CAAGGCATTGTTTCA 26404763 Query 93323 ATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGA 93382 ||||| || || || || |||| || | | ||| ||||| || || || | ||| Sbjct 26404764 ATAGCATTGAAGAGATACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGA 26404823 Query 93383 GAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCT 93442 || |||||||| || | || ||||| ||||||||||| || |||||||| | | Sbjct 26404824 CTGTATATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTC 26404883 Query 93443 TCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCG 93502 || || | || |||||||| |||| ||| | | |||||| ||||||| ||||| Sbjct 26404884 TCTGTAACTTGAACTTCTTGGCTGAATCGCTCCAAG---TTTTCACTGACTATGCCATCA 26404940 Query 93503 GATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTT-TAAGCTT 93561 | ||||||| ||||||| | || ||||||||| |||||| || ||||| Sbjct 26404941 CACACTGCAAAGAAAGCCAGAACGTGAGCAATAAAATGTCTCTCATGGGGTTCAAAGCT- 26404999 Query 93562 ATCCCAAT-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 ||||| | | || | ||| || ||||| || || | || |||||||||| || || | Sbjct 26405000 -TCCCAGTGCTGA-ATATCCTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCT 26405057 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAA 93666 | ||||| |||||||| | ||| || || || || | ||| ||||| Sbjct 26405058 CAGCTTTCTTGTACATCTGCCAGATATCATGGTACTCAATGGGAAA 26405103 >seq10 Length=113323912 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192 ||||||| ||||| | || || | |||||| |||||||||||||| ||||| || || Sbjct 23466426 CTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATATCGATGC 23466367 Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 |||| ||||||||| || || ||||| ||||| ||||| ||||||| Sbjct 23466366 AAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAA 23466320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556842834278440