Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9 131 1e-25 seq17 127 2e-24 seq13 111 1e-19 seq4 96.9 3e-15 >seq9 Length=107150856 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || | || || || || |||||||||| || || || Sbjct 80898673 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 80898614 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| || || ||||| || Sbjct 80898613 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 80898554 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || |||||||||||||||||| | |||||| || |||| |||| || ||| Sbjct 80898553 CAGCAGAGGCTGATATTTGCCGGCAAACAGGTGGAGGATGGCCACACCCTCTCGGACTAC 80898494 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| |||||| | || | || |||| ||||||| || Sbjct 80898493 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGCGGTGG 80898444 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || | || || || || |||||||||| || || || Sbjct 83841285 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 83841226 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| || || ||||| || Sbjct 83841225 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 83841166 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || ||||| |||||||||||| | |||||| || |||| |||| || ||| Sbjct 83841165 CAGCAGAGGCTGATATTCGCCGGCAAACAGCTGGAGGATGGCCACACCCTCTCGGACTAC 83841106 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| |||||| | || | || |||| ||||||| || Sbjct 83841105 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGCGGTGG 83841056 >seq17 Length=88915856 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | | || || || ||||||||||||| || || Sbjct 64220213 AACATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAAGTAGAGCCC 64220154 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || |||| || || ||||||||||| || | ||||| || Sbjct 64220153 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCCTCCCACCTGAC 64220094 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || |||||||||||||||||| | |||||| | ||||| | || |||||| Sbjct 64220093 CAGCAGAGGCTGATATTTGCCGGCAAACAGCTGGAGGATGGCTGCACCCTGTCTGATTAC 64220034 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| || ||||| |||||| | || | || |||| |||| || || Sbjct 64220033 AACACCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGGGGTGG 64219984 >seq13 Length=116904986 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | || || || || |||||||||| || || || Sbjct 35782959 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTTGAGCCC 35782900 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| || || ||||| || Sbjct 35782899 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 35782840 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || ||||||||| ||||| || | |||||| ||||||| | | | ||| Sbjct 35782839 CAGCAGAGGCTGATATTTGCCAGCAAAGAGCTGGAGGATGGCCGCACCCTGTTGCACTAC 35782780 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || ||||| |||||| Sbjct 35782779 AACATCCAGAAAGAGTCCACC 35782759 >seq4 Length=164141553 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||||||||| || || ||| || ||| | || || |||| || || ||||||| Sbjct 128787224 TCACTCTTGAGGTTGAGCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACA 128787283 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 |||| || || ||||| || || | | || ||||||| ||||||||| | |||||| Sbjct 128787284 AGGAAGGCATCCCACCTGACCAGCTGAGGCTGATATTTG-AGGCAAACAGCTGGAGGATG 128787342 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGAT 22435 | ||||| | || || |||||||| || ||||| |||||| | || | || || | Sbjct 128787343 GCTGCACCCTGTCGGACTACAACATCCAGAAAGAGTCCACCTTGCAACTGGTGCTGAGTC 128787402 Query 22436 TGCGCGGAGG 22445 ||||||| || Sbjct 128787403 TGCGCGGTGG 128787412 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || ||| || | | | || || |||| Sbjct 149231826 ACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGACAACATCGAGAATGTCAAGGCC 149231767 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| || || ||||| || || || | || ||||||||| ||||| Sbjct 149231766 AAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGCAGAGGCTGATATTTGCCAGCAAA 149231707 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 ||| | |||||| | ||||| | || || ||||||| Sbjct 149231706 CAGCTGGAGGATGGCTGCACCCTGTCGGACTACAACA 149231670 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || | ||| ||||| ||||||| || ||||| Sbjct 104846063 GTTAAAATGCAAATCTTCAAGAAGACCCTGACCAACAAAACCATCACTCTAGAGGTGGAG 104846122 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | ||| || || || || || ||||| || || || Sbjct 104846123 CCCAGTGACACCATCGAGAACGTGAAAGCCAAGATCCAGGATAAAGAGGGCATCCCCCCT 104846182 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || ||| | | || ||||| ||||| ||| | || ||| | ||||| |||| ||| Sbjct 104846183 GACCAGCAAAGGTTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCTGCACCCTCTCTGAT 104846242 Query 22393 TACAACATTCAAAAAGAATC 22412 |||||||| || ||||| || Sbjct 104846243 TACAACATCCAGAAAGAGTC 104846262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419714797062265