Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9 185 2e-41 seq17 167 4e-36 seq13 149 1e-30 seq4 140 6e-28 seq1 111 3e-19 seq28 95.1 2e-14 seq16 95.1 2e-14 seq23 93.3 8e-14 >seq9 Length=107150856 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| |||| ||| | ||||||||||| |||||||| || || ||| Sbjct 83841056 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 83841115 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || ||||| || | ||| || ||||||||||| || || || ||||| ||||| Sbjct 83841116 AGGGTGTGGCCATCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 83841175 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| |||||||| |||||||||||| | || || Sbjct 83841176 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 83841235 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||| |||||||| ||||| |||||||| Sbjct 83841236 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 83841282 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| |||| ||| | ||||||||||| |||||||| || || ||| Sbjct 80898444 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 80898503 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || ||||| || | ||| || ||||| ||||| || || || ||||| ||||| Sbjct 80898504 AGGGTGTGGCCATCCTCCACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 80898563 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| |||||||| |||||||||||| | || || Sbjct 80898564 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 80898623 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||| |||||||| ||||| |||||||| Sbjct 80898624 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 80898670 >seq17 Length=88915856 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| | ||||||||||| ||| |||| ||||| || Sbjct 64219984 CCACCCCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGAC 64220043 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || ||||| ||||| || || || ||||| ||||| Sbjct 64220044 AGGGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 64220103 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 | ||||||||||||||| ||||| |||||||| ||||||||| || | |||||| Sbjct 64220104 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCTACT 64220163 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||| | |||||||| || || |||||||| Sbjct 64220164 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 64220210 Score = 84.2 bits (92), Expect = 4e-11 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 ||||||||| |||||||||||| ||||| || ||||||| || ||||||||||||| Sbjct 17120047 AGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 17119988 Query 84513 AGCCCCACATCGGGCAGGTCGGCAGACTTT 84542 |||||||| | |||| | ||| ||||||| Sbjct 17119987 AGCCCCACGTTGGGC-GCACGG-AGACTTT 17119960 >seq13 Length=116904986 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || | || |||| || | ||||||||||| |||||||| || | | Sbjct 35782730 CCACCGCGCAGACACAGCACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTGCAAC 35782789 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || | ||| ||||| || || || ||||| ||||| Sbjct 35782790 AGGGTGCGGCCATCCTCCAGCTCTTTGCTGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 35782849 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| |||||||| |||||||||||| | || || Sbjct 35782850 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 35782909 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||| |||||||| || || |||||||| Sbjct 35782910 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 35782956 >seq4 Length=164141553 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | || || || ||||| ||||||||||| || || || Sbjct 18056543 CCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAC 18056602 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || || || || | || || || || || ||| Sbjct 18056603 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 18056662 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| ||||| || || || ||||| | | ||| || Sbjct 18056663 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 18056722 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||||||||| |||||||| || || |||||||| Sbjct 18056723 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | || || || ||||| ||||||||||| || || || Sbjct 99334556 CCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAC 99334615 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || || || || | || || || || || ||| Sbjct 99334616 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 99334675 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| ||||| || || || ||||| | | ||| || Sbjct 99334676 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 99334735 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||||||||| |||||||| || || |||||||| Sbjct 99334736 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 Score = 140 bits (154), Expect = 6e-28 Identities = 168/227 (74%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || | || |||| || | ||||||||||| |||||||| || || || Sbjct 128787412 CCACCGCGCAGACTCAGCACCAGTTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAC 128787353 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || | ||||| || || | ||||| ||||| Sbjct 128787352 AGGGTGCAGCCATCCTCCAGCTGTTTGCCT-CAAATATCAGCCTCAGCTGGTCAGGTGGG 128787294 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| |||||||| |||||||||||| | || || Sbjct 128787293 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 128787234 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||| | |||||||| | ||| |||| ||| Sbjct 128787233 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCAGGAAGATCTACAT 128787187 Score = 127 bits (140), Expect = 4e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 68268 GACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCG 68327 |||||||| |||||||| ||||| ||||| || | |||||||| | |||||| || || Sbjct 104846262 GACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCCAGCTGCTTGCCAGCA 104846203 Query 68328 AATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 || |||| ||||| ||||| || || ||||| || || || || ||||| || || ||| Sbjct 104846202 AAGATGAACCTTTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCTTTCACG 104846143 Query 68388 GCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTG 68447 |||||||||||| | || || || | ||||||||||| || |||||||| Sbjct 104846142 TTCTCGATGGTGTCACTGGGCTCCACCTCTAGAGTGATGGTTTTGTTGGTCAGGGTCTTC 104846083 Query 68448 ACGAATATCTGCATT 68462 ||| || |||||| Sbjct 104846082 TTGAAGATTTGCATT 104846068 Score = 123 bits (136), Expect = 5e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 68277 TGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGT 68336 ||| |||| || || || || || | ||||| || | ||| || | ||| ||||| || Sbjct 149231666 TGGGTGTTGTAGTCCGACAGGGTGCAGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGC 149231725 Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || ||||| ||||| ||||||||||||||||| ||||| |||||||| ||||||| Sbjct 149231726 CTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATG 149231785 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||| | || || || | |||||||| || ||||| |||||||| ||||| Sbjct 149231786 TTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 149231841 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| | ||| || | ||| || | ||||| |||| ||||| || || || | || | Sbjct 31007712 GAAGTCTCAACACAAGGTGAAGGATAGACTCCGTTTGAATGTTGTAGTCAGACAAAGTAC 31007771 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 |||||||| | |||||| || || || || | || || || || || ||| |||| Sbjct 31007772 AGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAAGAAGTCCTT 31007831 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 | || | || ||||| ||||| || || || ||||| | | ||| | || | | Sbjct 31007832 CATTATTCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAACTCGAGTG 31007891 Query 68422 TGATGGTTTTTC-CCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||| || | |||||||| || ||||||||||| Sbjct 31007892 TGATGGTTTTTCTCCATAAGGGTCTTCACAAATATCTGCAT 31007932 >seq1 Length=172151128 Score = 111 bits (122), Expect = 3e-19 Identities = 153/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 68254 CCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || || ||||| ||||| ||||| || || | || | |||||||| Sbjct 144045284 CCAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGAAAGACAAAGTACGGCCATCTTCC 144045343 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || | ||| || | || || ||||| |||||||| || || Sbjct 144045344 AGCTGCTTACCCGCAAAGATCAATCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCTGG 144045403 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || || || ||||| | | ||| || | | ||||||||||| Sbjct 144045404 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCTTGATGGTTTTT 144045463 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| | |||||| || || |||||||| ||| Sbjct 144045464 CCCGTAAAGGTCTTCACAAAAATCTGCATCATG 144045496 >seq28 Length=148379591 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/144 (75%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || |||| ||| |||||||| ||||| ||||| || || |||||||| | ||| Sbjct 9099112 GTGCAGGGTCGACTTTTTCTGGATGTTGTAATCAGAGAGGGTGCTGCCATCTTCCAGCTG 9099053 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || ||||| || || ||||| || | || | || || || || ||||| Sbjct 9099052 CTTGCCTGCAAA-ATGAGCCTCTGCTGGTCAGGGAGGATAACCTCTTTATCCTGGATCTT 9098994 Query 68378 TGCCTTGACGGCCTCGATGGTGTC 68401 |||||| || || ||||| ||| Sbjct 9098993 TGCCTTCACATTCTTGATGGAGTC 9098970 >seq16 Length=96704406 Score = 95.1 bits (104), Expect = 2e-14 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 68238 CCGCGAAGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAG 68296 || ||||| | ||| || | | | || || ||||||||||| ||| | || || |||| Sbjct 4426014 CCACGAAGTCTCAACACAAGGCTAAAGGGTAGACTCTTTTTGAATGCTGTAGTCAGAGAA 4425955 Query 68297 TGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAAT 68356 || ||||||| | ||| || || || || || || || || || || || ||||| Sbjct 4425954 AGTATGGTCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAAT 4425895 Query 68357 GCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTC 68416 | |||||| || || |||| ||||| || || | ||||| | ||||| || || Sbjct 4425894 TCTTTCCTTATCCTGGGTCTTGGCCTTTACATTTTC--TAGTGTCCGAGGATTCAACCTC 4425837 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||||||||| ||||| | |||||| || || Sbjct 4425836 CAGTGTGATGGTTTTCCCCGTAAAGGTCTTCACAAA 4425801 >seq23 Length=89631738 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| ||||| |||||||| |||||||||||| | || || || Sbjct 85175431 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 85175490 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || ||||| |||||||| ||||| |||||||| Sbjct 85175491 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 85175534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921592666157320