Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 seq16 82.4 6e-11 >seq4 Length=164141553 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || |||||||| || | ||| | ||||| || ||||| |||||||| || Sbjct 18056542 ACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGA 18056601 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || |||||||| |||| | | ||| || || ||||| Sbjct 18056602 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 18056661 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 18056662 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 18056721 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || || || || || |||||||||||||| Sbjct 18056722 CTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || |||||||| || | ||| | ||||| || ||||| |||||||| || Sbjct 99334555 ACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGA 99334614 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || |||||||| |||| | | ||| || || ||||| Sbjct 99334615 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 99334674 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 99334675 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 99334734 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || || || || || |||||||||||||| Sbjct 99334735 CTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 >seq16 Length=96704406 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/220 (69%), Gaps = 11/220 (5%) Strand=Plus/Minus Query 114159 CCACGTAGTCTCAAAAC-----TAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 ||||| |||||||| || |||| | ||||| |||||||||||| |||| || Sbjct 4426014 CCACGAAGTCTCAACACAAGGCTAAAGG----GTAGACTCTTTTTGAATGCTGTAGTCAG 4425959 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | |||| | |||||| || ||||||||||| |||| || | ||| || || |||| Sbjct 4425958 AGAAAGTATGGTCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAG 4425899 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| | ||| || || |||| |||| | ||| | ||||| | |||||| | Sbjct 4425898 GAATTCTTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTA--GTGTCCGAGGATTCAA 4425841 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 114373 | |||| || | ||||| || || | || || ||||| Sbjct 4425840 CCTCCAGTGTGATGGTTTTCCCCGTAAAGGTCTTCACAAA 4425801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420121184278572