Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq21 84.2 4e-11 >seq21 Length=68186955 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || || || || || |||||||| || | || || | || |||| Sbjct 4933718 TGGTAGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCTGCGATATTCT 4933659 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| || ||||| ||||| || || || || ||||| ||||||||| Sbjct 4933658 GGCTAAAGAAGAGAGGCCTC-ATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGG 4933600 Query 42825 GACGA 42829 || || Sbjct 4933599 GATGA 4933595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944308733256560