Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq8 100 3e-16 >seq8 Length=167013402 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||| | || ||||| ||| | |||||||||||||| || ||||||| ||||| | Sbjct 105296524 AGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 105296583 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| || || || || || | ||| ||| ||| || ||| | ||||| |||| || | Sbjct 105296584 TGCCCCAAGCAGAGAAGCATGGCCCGGAAATCAAGGAGCATTTGAATTCCCTGGGAGAGA 105296643 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTGCG 10008 | || |||||||| || | || ||||| Sbjct 105296644 AGCTGAAGACCCTCAGGATGCGGCTGCG 105296671 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| | ||||| ||||||| |||||||||||| || || |||| || Sbjct 105298782 AGCTCCAAGACAAAGGCGTCTACAAGGCCATGAATGAATTTGACATCTTCATCAACTGCA 105298841 Query 10140 TAGAAGCATACATGACAATTAAA 10162 ||||||||||||||| || ||| Sbjct 105298842 TAGAAGCATACATGAAGATCAAA 105298864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552698967974240