Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq28 131 2e-25 seq4 114 1e-20 seq17 96.9 3e-15 >seq28 Length=148379591 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| | ||| || ||||||||||| | || ||||| | ||||| |||||| |||| Sbjct 136136154 GTCGACTTTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCCAGCTGCCTGCCT 136136213 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| |||| || ||||| || || || || ||| Sbjct 136136214 GCAAAGATGAGCCTCTGCTGGTCGGGGTGAATGCCCTCTTTATCCTGGATCTTGCCCTTC 136136273 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || |||| |||| || | |||||||||||||| || Sbjct 136136274 ACATTCTTGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 136136333 Query 64427 TTTACGAAAATTTGCATTTT 64446 || | ||| ||||||||||| Sbjct 136136334 TTCATGAAGATTTGCATTTT 136136353 Score = 109 bits (120), Expect = 5e-19 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | || ||||| | ||||| || |||||||| Sbjct 9098651 GTTGAGTCTTTCTGGATGTTGTAATCAGAGAGGGTGCTGCCATCTTCCAGATGCTTGCCT 9098710 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||||| || ||| || || ||||| ||||| || || || || ||| Sbjct 9098711 GCA-AAATGAGCCTCTACTGATCAGGGGGAATGTACTCTTTATCCTGGATCTTGGCCTTC 9098769 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | |||||||||||||| || Sbjct 9098770 ACGGTCTCGATAGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 9098829 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || |||||||| Sbjct 9098830 TTCACAAAGATGTGCATTTT 9098849 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/139 (77%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || ||||| || | ||||| | ||| || ||||||||||| | || ||||| | ||| Sbjct 9099120 AGGACTAGGTGCAGGGTCGACTTTTTCTGGATGTTGTAATCAGAGAGGGTGCTGCCATCT 9099061 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTC-GGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| ||||||||| ||||||||| |||||| || | ||||| || Sbjct 9099060 TCCAGCTGCTTGCCTGCA-AAATGAGCCTCTGCTGGTCAGGGAGG-ATAACCTCTTTATC 9099003 Query 64351 TTGTATTTTTTGCTTTACA 64369 || || ||| ||| ||| Sbjct 9099002 CTGGATCTTTGCCTTCACA 9098984 >seq4 Length=164141553 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| || ||||||||||| | || ||||| | ||||| ||||||||||| ||| Sbjct 104846262 GACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCCAGCTGCTTGCCAGCA 104846203 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-AC 64368 | |||| || |||||||| || || || || ||||| || || || || ||||| || Sbjct 104846202 AAGATGAACCTTTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTG-GCTTTCAC 104846144 Query 64369 AACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTT 64428 ||| | || |||| || ||||| |||| ||| | ||| ||| ||||| || || Sbjct 104846143 GTTCTCGATGGTGTCACTGGGCTCCACCTCTAGAGTGATGGTTTTGTTGGTCAGGGTCTT 104846084 Query 64429 TACGAAAATTTGCATTTTAA 64448 ||| ||||||||||||| Sbjct 104846083 CTTGAAGATTTGCATTTTAA 104846064 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || ||||| |||||||| || | Sbjct 18056542 ACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGA 18056601 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | || | || |||||| || ||||| Sbjct 18056602 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 18056661 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | || || || || || Sbjct 18056662 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 18056721 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || || || | || || || ||||| ||||| Sbjct 18056722 CTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || ||||| |||||||| || | Sbjct 99334555 ACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGA 99334614 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | || | || |||||| || ||||| Sbjct 99334615 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 99334674 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | || || || || || Sbjct 99334675 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 99334734 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || || || | || || || ||||| ||||| Sbjct 99334735 CTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 >seq17 Length=88915856 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/158 (74%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 |||| ||||||||||| ||| | ||||||| ||||||||| || || || || ||||| | Sbjct 31247679 CTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTAT 31247738 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 | || || || |||| ||||| ||||||| || ||||| || | || | || Sbjct 31247739 CCTGGATCTTGGTTTTTATGTTCTCCATGGTATCACTGGGCTCCACCTCCAGGGTGATGG 31247798 Query 64410 TC-TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || ||||| |||| || |||| ||| ||| ||||||| Sbjct 31247799 TCTTTGCCAGTCAGGGTCTTTATGAAGATTAGCATTTT 31247836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499628680209640