Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 >seq4 Length=164141553 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| ||||| || ||||| || Sbjct 18056540 GCACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCC 18056599 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || ||||| ||||||| | ||||||||| ||| Sbjct 18056600 GACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGA 18056659 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 18056660 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCA 18056719 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||||| || || || || || |||||||||||||| Sbjct 18056720 ACCTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| ||||| || ||||| || Sbjct 99334553 GCACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCC 99334612 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || ||||| ||||||| | ||||||||| ||| Sbjct 99334613 GACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGA 99334672 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 99334673 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCA 99334732 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||||| || || || || || |||||||||||||| Sbjct 99334733 ACCTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485459155440