Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq8 149 9e-31 seq4 118 2e-21 seq1425 86.0 9e-12 >seq8 Length=167013402 Score = 149 bits (164), Expect = 9e-31 Identities = 204/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || ||||| |||||||| | || || || | ||| Sbjct 123226512 AAGGGACACCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATC 123226453 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || |||||||| || |||||||| || || |||||| Sbjct 123226452 TTAAAACCCACTTCGCCTCCAAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 123226393 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| ||| || ||| Sbjct 123226392 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGAACTCCCCCAAG 123226333 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | | ||| | |||||| || | | | ||| || ||||| | || || | | Sbjct 123226332 ATAGCATCTGAACGAGATTTTTCCACCAGCAGGGCAGGATACAGTTCCATGGCATCAATG 123226273 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | |||||||||| |||||| ||||| | |||||||| ||| Sbjct 123226272 TCACTGTAGAGGGCTTTCAACTCTGCAGCCGTTTCCTTCTCTCCT 123226228 Score = 113 bits (124), Expect = 7e-20 Identities = 202/293 (69%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || ||||||||||| ||||| || ||||| || || | | ||| || | | ||| Sbjct 123225410 CCGGCCAGCAATCTGTCTGGTGAATGACTCAACAAACTGAGTGAGTCCATGTTCCAGGAG 123225351 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | || |||| | | | |||| | ||| | ||| || Sbjct 123225350 GATGGAGTTGTTGTAGAGAAACTGTTTGAAGCTGTACTCCTGGTCTTCAATGTTGAAGGT 123225291 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || |||| ||||| |||||| | ||||| || ||||| || | || || |||||||| Sbjct 123225290 GTCGGGCAGCAGAGGGTGCCAGTGATAGAGTGTGTTGAATTCAGAGGCAATGCGGTTCTG 123225231 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || ||| ||| || | ||| || ||||| | || | ||||||||| Sbjct 123225230 ATACTGGAACTTCTGGT--TGAAAAGGAGCTCTGGATCAAACTTGAGTTTGAAGTGGTAA 123225173 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 ||||| || || || || || | | ||| | || || || ||||| || || Sbjct 123225172 CCGCTCAGGTGTTGCACGTAGTCTTCGATCACTATCTTGATAGTTTCTCCTGT 123225120 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||| ||||| || | ||||| ||||||||| | || ||||| || | || || Sbjct 123222899 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACTGGAGGAAGGGCCCTGGTG 123222840 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| ||||| || || ||||||||||| ||||| ||||| | | ||||| Sbjct 123222839 TAGTAGGAGAGATTGGAGAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTT 123222780 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 123222779 GGTGGACTGTCAATCAAATGTGATCTGGCT 123222750 >seq4 Length=164141553 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || | || || || | ||| || ||||| |||||||||||||||||| | Sbjct 23565553 GCTGTGTTGACAAGGTTGAAGCCCATGTCACCACCGAACGTGCTGGGTTTCCAGTACTCT 23565494 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| ||| | | ||| || || | |||||| |||||||||| ||| || Sbjct 23565493 GGGGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCCATCTCTATC 23565434 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || || || || ||||||| ||| | || || | | || || | ||||| Sbjct 23565433 ATACTTTCCCCAAAGATGGAGTTGGGCTGGCACTTCTCCAGCAGCAACCCTGGGTAGAAC 23565374 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| || | ||| || || || | |||||||| || || ||||||||||| ||| Sbjct 23565373 TCTAAAGCATCAATGTCACCGTACAGCTCCTCCAACTCAGCGGCCATCTCCTTCTCTCCT 23565314 >seq1425 Length=25237 Score = 86.0 bits (94), Expect = 9e-12 Identities = 190/285 (67%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || ||||| |||||||| || || || | ||| Sbjct 11051 AAGGGACACCCCTTCACATTTTTGCAGATGAGAGACTGAATTAAGGCAGTGTTGATGATC 11110 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || | || | ||||||||| || ||||||| || | |||||| Sbjct 11111 TTAAAACCCACTACTCCACTGAAGGTGCTCGGCTTCCAGTGTTGAGGATAACAGATGGGA 11170 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 | || | || ||||||||| | || || || || || || | | | || | || Sbjct 11171 TCACCCCTAAGTCCTTTCAAGAAGAATGGTGCTCCAAGTTCTACCAAATTGTCCCGCAAA 11230 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | |||| || ||||| | | | ||||| |||||||| | | |||| | Sbjct 11231 ATAGCAACTGGACAGGGCTTTTCCTCCAGCAGGCCAGGATAGAGTTCCATGGTGTCGATG 11290 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | | ||||||||| |||| | | | |||| | |||||| ||| Sbjct 11291 CCACTGAAGAGGGCTTTCAACCCTGTACCTATTTGCTTCTCTCCT 11335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723704650725400