Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 3e-12 >seq1 Length=172151128 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTG 204014 |||| || || || |||||||| | |||||||||||| |||||||||| | | || | Sbjct 73318123 TGGGCTCAGCAATATGAATGTTTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGG 73318064 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||| |||| || |||||||| || || |||||||| ||||| Sbjct 73318063 CTGCCATCTTGAGAACAGTCTTCTGAGAGATTTCCCACACGGTCTT 73318018 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | |||||| || ||||||| |||||| || || || | Sbjct 73318272 CCTGCTTCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATAT 73318213 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 ||||||| | |||||||||||| |||||||||| | | || || ||||| |||| || Sbjct 73318212 GAATGTTTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAA 73318153 Query 204030 TGGTCTTCTGCGAAAT 204045 |||||||| || || Sbjct 73318152 CAGTCTTCTGAGAGAT 73318137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795129546305360