Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9 136 4e-27 seq13 114 1e-20 seq4 105 8e-18 seq17 82.4 9e-11 >seq9 Length=107150856 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| ||||| || ||| || ||||| |||||||| | Sbjct 83841054 TGCCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCG 83841113 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||| | | || || ||||| |||||||||||||||| | ||||||||| | | Sbjct 83841114 AGAGGGTGTGGCCATCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTG 83841173 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| |||||| ||||| || | | ||||| || | || | Sbjct 83841174 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGA 83841233 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | |||||||| ||||||||||| || || || ||||| ||||| ||| Sbjct 83841234 CCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTTG 83841286 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| ||||| || ||| || ||||| |||||||| | Sbjct 80898442 TGCCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCG 80898501 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||| | | || || | ||| |||||||| ||||||| | ||||||||| | | Sbjct 80898502 AGAGGGTGTGGCCATCCTCCACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTG 80898561 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| |||||| ||||| || | | ||||| || | || | Sbjct 80898562 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGA 80898621 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | |||||||| ||||||||||| || || || ||||| ||||| ||| Sbjct 80898622 CCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTTG 80898674 >seq13 Length=116904986 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | || || |||||| | ||| || ||| || ||||| ||||||| Sbjct 35782728 TGCCACCGCGCAGACACAGCACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTGCA 35782787 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||| |||| ||| ||||||| | ||||||||| | | Sbjct 35782788 ACAGGGTGCGGCCATCCTCCAGCTCTTTGCTGGCAAATATCAGCCTCTGCTGGTCAGGTG 35782847 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| |||||| ||||| || | | ||||| || | || | Sbjct 35782848 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAA 35782907 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | |||||||| ||||||||||| || || |||||||| ||||| ||| Sbjct 35782908 CCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTTG 35782960 >seq4 Length=164141553 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | ||| |||||||||||| |||||||| || | ||| || | || Sbjct 18056557 CAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATC 18056616 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || |||||||| || || || ||||| | |||||| || | || | | ||||| || Sbjct 18056617 TTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 18056676 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | ||||| | ||| || || | ||||||||| Sbjct 18056677 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 18056736 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||||| || ||||| Sbjct 18056737 TTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | ||| |||||||||||| |||||||| || | ||| || | || Sbjct 99334570 CAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATC 99334629 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || |||||||| || || || ||||| | |||||| || | || | | ||||| || Sbjct 99334630 TTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 99334689 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | ||||| | ||| || || | ||||||||| Sbjct 99334690 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 99334749 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||||| || ||||| Sbjct 99334750 TTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGT--ACTCTC-CT-----TTTGGATATT 46416 |||| || | | ||| | |||||| ||||| || |||||| || | ||| | || Sbjct 149231614 TGCCCCCACGCAGACGTAGCACCAGGTGCAAGGTGGACTCTCTCTGGGTGTCTGGGTGTT 149231673 Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 |||||| || || |||| | || || ||||| |||| ||| ||||||| | |||||| Sbjct 149231674 GTAGTCCGACAGGGTGCAGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGCCTCTGCTG 149231733 Query 46477 GTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCT 46536 ||| | || | || |||||||| |||||| ||||| || | | |||| || Sbjct 149231734 GTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGTTGTCACT 149231793 Query 46537 CGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT----AACAAAGATTTGCA 46592 | || || || | |||||||| ||||||||||| || || || ||||| |||| Sbjct 149231794 GGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGGAAGATCTGCA 149231853 Query 46593 TTTTG 46597 | ||| Sbjct 149231854 TGTTG 149231858 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||| || || || |||| | || || ||||||||||| || || Sbjct 104846260 CTCTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCCAGCTGCTTGCCAGCAAA 104846201 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || || | |||||||| | || | || ||| || ||| |||||| || | | Sbjct 104846200 GATGAACCTTTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCTTTCACGTT 104846141 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | ||||| || | |||||||||||| ||||| || || Sbjct 104846140 CTCGATGGTGTCACTGGGCTCCACCTCTAGAGTGATGGTTTTGTTGGTCAGGGTCTTCTT 104846081 Query 46582 AAAGATTTGCATTTT 46596 |||||||||||||| Sbjct 104846080 GAAGATTTGCATTTT 104846066 >seq17 Length=88915856 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/157 (72%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || ||||||||||| || || || | | ||||||||| | || | || ||| || ||| Sbjct 31247681 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 31247740 Query 46502 ATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT- 46560 |||||| | || | || ||| || || || | ||||| |||| |||||||| Sbjct 31247741 TGGATCTTGGTTTTTATGTTCTCCATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 31247800 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||| ||||| || || | |||||| |||||||| Sbjct 31247801 TTTGCCAGTCAGGGTCTTTATGAAGATTAGCATTTTG 31247837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565220163996120