Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1997 178 1e-39 seq9 129 6e-25 seq28 104 2e-17 seq4 96.9 3e-15 seq13 93.3 4e-14 seq17 87.8 2e-12 >seq1997 Length=85722 Score = 178 bits (196), Expect = 1e-39 Identities = 422/626 (67%), Gaps = 19/626 (3%) Strand=Plus/Plus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGA-AATGAGTTC 132938 |||||||||||| || |||||||| || || || |||||||| || | ||| || || Sbjct 33644 TGCTTGAACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTC 33703 Query 132939 GTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAAT-ATGGCGGCGA 132997 ||| || || | ||| ||||| || | ||| || |||||||| | | || | || | Sbjct 33704 ATTGGAAAATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAA 33763 Query 132998 AACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACG 133057 || || |||||||||| | || || || || |||| | | || || || | Sbjct 33764 AAGAACCAGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCC-AATG 33822 Query 133058 TGGC---TTCT--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCA 133112 | | |||| ||| | ||||| | || ||||| || ||||| | || || || Sbjct 33823 TCCCCAATTCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACA 33882 Query 133113 CGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGA--GGAACGC--ACGT 133168 ||||| |||| || || || || | || ||||||| | ||| | | || Sbjct 33883 AGGCATTGTTTAAATAGCATTGAAGA----GATATTCTCTTTCCTTGGGATCTTTAATGT 33938 Query 133169 AGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGC 133228 | ||||| || ||| |||||||| |||| ||||||||||||||| ||||| |||| Sbjct 33939 AAGTGTCCATAAGGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGC 33998 Query 133229 CGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-CGCTCGACCAGATTT 133287 | || || || || ||||| || || |||||||| || ||| ||||| |||| ||| Sbjct 33999 CATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTG-GCTAAATCGCTCCACCAAGTTT 34057 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 || ||||| ||||| | || || ||||| ||||| ||||| || | ||| | | Sbjct 34058 TCATTGACTATGCCACCACTCATTGC-AAAAAAGCCAGAACGTGAGATATAAGATGTCTC 34116 Query 133348 TCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACG 133407 || | | ||| | ||||| | | ||||||| | ||||||||||||| | Sbjct 34117 TCATCGGGTTTCTGATCTTTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCA 34176 Query 133408 GTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGA 133467 |||||||| || | ||| ||||| |||||||| || || || |||| |||||| Sbjct 34177 GTCCAAAAGGAGGTCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATTCAATGGGA 34236 Query 133468 AAAATCACAAACCGGCGGGGGTTTTC 133493 || | | || ||||| || ||||| Sbjct 34237 AAGACAAGGAAGCGGCGAGGATTTTC 34262 >seq9 Length=107150856 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || |||||||| |||||||| | || |||||| || Sbjct 83841285 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 83841226 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || || || | ||| Sbjct 83841225 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 83841166 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | ||| |||||||||||||| || | | ||||||| |||||| Sbjct 83841165 CAGCAGAGGCTGATATTCGCCGGCAAACAGCTGGAGGATGGCCACACCCTCTCGGACTAC 83841106 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || |||| ||||||||||| || | || ||| Sbjct 83841105 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGCGGTGGC 83841055 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || |||||||| |||||||| | || |||||| || Sbjct 80898673 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 80898614 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || || || | ||| Sbjct 80898613 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 80898554 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||||||| |||| || | | ||||||| |||||| Sbjct 80898553 CAGCAGAGGCTGATATTTGCCGGCAAACAGGTGGAGGATGGCCACACCCTCTCGGACTAC 80898494 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || |||| ||||||||||| || | || ||| Sbjct 80898493 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGCGGTGGC 80898443 >seq28 Length=148379591 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||| | || || || || ||||| ||||||||| | || | ||| || Sbjct 136136353 AAAATGCAAATCTTCATGAAGACCCTGACCGGCAAGACCATCACCCTAGAGATGGAGCCC 136136294 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | || | || |||| || |||||||| |||| | ||||| Sbjct 136136293 AGTGAAACCATCAAGAATGTGAAGGGCAAGATCCAGGATAAAGAGGGCATTCACCCCGAC 136136234 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || |||| |||||||| || | |||||||| || ||| Sbjct 136136233 CAGCAGAGGCTCATCTTTGCAGGCAGGCAGCTGGAAGATGGCTGCACCCTCTCTGATTAC 136136174 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||| || | |||| || || |||| || Sbjct 136136173 AACATCCAGAAAAAGTCGACCCTACACCTGGTCCT 136136139 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 9098849 AAAATGCACATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 9098790 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | || | || | || |||| || |||||| |||||| | || Sbjct 9098789 AGTGACACTATCGAGACCGTGAAGGCCAAGATCCAGGATAAAGAGTACATTCCCCCTGAT 9098730 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || ||||||||| || ||||| || ||||| || | |||||||| || ||| Sbjct 9098729 CAGTAGAGGCTCATTTT-GCAGGCAAGCATCTGGAAGATGGCAGCACCCTCTCTGATTAC 9098671 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTG 38450 |||||||| || || | || ||||| ||| Sbjct 9098670 AACATCCAGAAAGACTCAACCCTGCACTTG 9098641 >seq4 Length=164141553 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||| || || || || |||||||||||| | || || ||| || Sbjct 104846066 AAAATGCAAATCTTCAAGAAGACCCTGACCAACAAAACCATCACTCTAGAGGTGGAGCCC 104846125 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | |||| || |||| || |||||||| || ||| | || Sbjct 104846126 AGTGACACCATCGAGAACG-TGAAAGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGA 104846184 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || |||| | || ||||| |||||||| || | |||||||| || || Sbjct 104846185 CCAGCAAAGGTTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCTGCACCCTCTCTGATTA 104846244 Query 38420 CAACATCCAAAAGGA 38434 ||||||||| || || Sbjct 104846245 CAACATCCAGAAAGA 104846259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||| | || ||| | || || || | |||||| |||||||| | || || ||| || Sbjct 128787184 AACATGTAGATCTTCCTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTTGAGCCC 128787243 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || || || | ||| Sbjct 128787244 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 128787303 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || | | |||| || | | || |||||||||||| || | ||||||| |||||| Sbjct 128787304 CAGCTGAGGCTGATATTTGAGG-CAAACAGCTGGAGGATGGCTGCACCCTGTCGGACTAC 128787362 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || |||| |||||||| || || | || ||| Sbjct 128787363 AACATCCAGAAAGAGTCCACCTTGCAACTGGTGCTGAGTCTGCGCGGTGGC 128787413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| |||||||| | || |||||| ||| |||| | | Sbjct 149231841 TTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGACAACATC 149231782 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || | || |||| ||||| || || || || | ||||| ||| |||| Sbjct 149231781 GAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGCAGAGGCTG 149231722 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 || | || ||||||||||||| || | ||||||| |||||||||| ||| Sbjct 149231721 ATATTTGCCAGCAAACAGCTGGAGGATGGCTGCACCCTGTCGGACTACAACACCCA 149231666 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || ||||| ||||||||||| |||| || || || | Sbjct 18056769 ATGCAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 18056710 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| || || || |||||||| | || || Sbjct 18056709 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 18056650 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || |||||||| || | || || | ||||||||| Sbjct 18056649 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAAC 18056590 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||||||||| | || || ||| | ||| || Sbjct 18056589 ATCCAAAAGGAGTCTACCCTTCATCTTGTGTTG 18056557 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || ||||| ||||||||||| |||| || || || | Sbjct 99334782 ATGCAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 99334723 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| || || || |||||||| | || || Sbjct 99334722 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 99334663 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || |||||||| || | || || | ||||||||| Sbjct 99334662 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAAC 99334603 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||||||||| | || || ||| | ||| || Sbjct 99334602 ATCCAAAAGGAGTCTACCCTTCATCTTGTGTTG 99334570 >seq13 Length=116904986 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || |||||||| |||||||| | || || ||| || Sbjct 35782959 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTTGAGCCC 35782900 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || || || | ||| Sbjct 35782899 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 35782840 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| ||||||| || | |||||||| ||||| Sbjct 35782839 CAGCAGAGGCTGATATTTGCCAGCAAAGAGCTGGAGGATGGCCGCACCCTGTTGCACTAC 35782780 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || || | |||||||| || || | || ||| Sbjct 35782779 AACATCCAGAAAGAGTCCACCTTGTACCTGGTGCTGTGTCTGCGCGGTGGC 35782729 >seq17 Length=88915856 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || | |||||| |||||||| | || || ||| || Sbjct 64220213 AACATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAAGTAGAGCCC 64220154 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | || | || |||| ||||| || || | || | ||| Sbjct 64220153 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCCTCCCACCTGAC 64220094 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || |||||||||||||| || | ||||||| || ||| Sbjct 64220093 CAGCAGAGGCTGATATTTGCCGGCAAACAGCTGGAGGATGGCTGCACCCTGTCTGATTAC 64220034 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| ||| || || | || |||| ||||||||||| || | || ||| Sbjct 64220033 AACACCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGGGGTGGC 64219983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500156663175040