Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq854 132 2e-25 seq4 105 3e-17 seq28 102 3e-16 seq21 86.0 2e-11 seq26 84.2 9e-11 seq13 84.2 9e-11 seq9 84.2 9e-11 >seq854 Length=65724 Score = 132 bits (146), Expect = 2e-25 Identities = 391/597 (65%), Gaps = 5/597 (1%) Strand=Plus/Plus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTT 451955 |||| ||||| | || || |||||||| |||| || || ||||| | | || Sbjct 43034 ATGATATTGTCTTGGTGGGTGGTTCTACCAGAATCCCCAAGATTCAGAAACTTCTGCAAG 43093 Query 451956 CTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATG 452015 | ||| |||||| |||| ||||||| | || || ||||||||||||| |||| Sbjct 43094 ACTTTTTCAATGGAAAAGAACTGAATAAGAGCATTAACCCCAATGAAGCTGTTGCCTATG 43153 Query 452016 GTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTC 452075 |||| || || || ||||| ||||| | || || ||| || | ||| | | Sbjct 43154 GTGCAGC-GTCCAGGCAGCCATTCTCTCTGGAGACAATTCTGAGAATGTTCAGGATTTGC 43212 Query 452076 TGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTA 452135 || | | ||||| || ||||| || ||||| ||||||| ||||||||| | ||||| Sbjct 43213 TGCTCTTGGATGTCACTCCTCTTTCCCTTGGTATTGAAACTGCTGGTGGAGTCATGACNG 43272 Query 452136 ATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAA 452195 | || || || || | || || || ||| || || || | || Sbjct 43273 TCCTCATCAAGCGCAATACCACCATCCCCACCAAGCAGACACAGACNTTCACCACCTACT 43332 Query 452196 GTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAG 452255 ||||||||| ||||||||| ||||| |||| |||||| ||| | || ||||| | Sbjct 43333 CTGATAACCAGCCAGGTGTACTCATTCAGGTGTATGAAGGTGAAAGGGCCATGACCAAGG 43392 Query 452256 ATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTC 452315 | || || || ||| | ||| || || ||| ||||| || | || || Sbjct 43393 ACAACAACCTGCTTGGAAAGTTTGAGCTCACAGGCATACCTCCAGCACCCCGTGGGGTTC 43452 Query 452316 CTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTG 452375 |||| ||||| |||| | ||| | ||||| ||||| || || ||||| ||| || | Sbjct 43453 CTCAGATTGAGGTTACTTTTGACATNGATGCCAATGGCATCCTCAATGTTTCTGCTGTAG 43512 Query 452376 A-AAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATC 452433 | || | || | || ||| |||| || || || || || ||||| || | | || Sbjct 43513 ATAAGAGCA-CAGG-AAAGGAGAACAAGATCACCATCACCAATGACAAGGGCTGCTTGAG 43570 Query 452434 TAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 ||| ||||||||||| ||||| | ||||| || || | ||||| ||| |||| Sbjct 43571 TAAGGAAGATATTGAGCGCATGGTCCAGGAAGCTGAGAAGTACAAGGCTGAGAATGA 43627 >seq4 Length=164141553 Score = 105 bits (116), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || || ||||| || || || || |||||| | || Sbjct 18056769 ATGCAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 18056710 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || || |||||||||||||||||||||||||| Sbjct 18056709 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 18056650 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || || || || |||||||| | |||||| |||| || || Sbjct 18056649 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAAC 18056590 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || ||||| | || || ||||| Sbjct 18056589 ATCCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACT 18056552 Score = 105 bits (116), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || || ||||| || || || || |||||| | || Sbjct 99334782 ATGCAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 99334723 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || || |||||||||||||||||||||||||| Sbjct 99334722 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 99334663 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || || || || |||||||| | |||||| |||| || || Sbjct 99334662 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAAC 99334603 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || ||||| | || || ||||| Sbjct 99334602 ATCCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACT 99334565 Score = 91.5 bits (100), Expect = 6e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || ||||| ||||||||||| || ||||||||||| Sbjct 22065678 GTTACCCATGCAGTTGTTACTGTACCAGCTTACTTCAATGATGCCCAGCGGCAAGCAACC 22065737 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| || ||||||||| | ||||| | | || || ||||| || Sbjct 22065738 AAAGATGCTGGCACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 22065790 >seq28 Length=148379591 Score = 102 bits (112), Expect = 3e-16 Identities = 219/329 (67%), Gaps = 9/329 (3%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 || ||||||||||| |||||| | || | || ||| | |||| || || | Sbjct 51220759 AAGATGAAAGAAACTGCAGAAAATTACTTGGGCCAAACAGCAAAAAATGCTGTGATCATA 51220700 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || |||||||||||||| |||| |||| || ||||| ||| | || | || || Sbjct 51220699 GTCCCTGCTTATTTCAATGACTCACAGTGGCAGGCCACTAAGGATACTGGCTAGATATCT 51220640 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 || ||||| | ||| || | || ||||| |||||||| ||||||| | ||||| || Sbjct 51220639 GGGCTAAATATGCTTTGAGTGATGAATGAGCCTACAGCTTCTGCTCTGACTTATGGTTTA 51220580 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | |||| | ||||| ||| ||| ||| |||||| ||||| |||| Sbjct 51220579 GATAAAT---------CTGAAGATAAAGTCATTGCTATATATGATTTAGGTGGTGGAATC 51220529 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 ||| | |||| |||| |||| | | | || ||||| || || | | ||||| Sbjct 51220528 TTTGACATTTCTATACTGGAAATTCAGAAAGAAGTGTTTGAGGTGAAATCTAATAATGGG 51220469 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGA 451602 || ||| |||||| |||||| |||| Sbjct 51220468 GACACTTTATTAGGAGATGAAGACTTTGA 51220440 >seq21 Length=68186955 Score = 86.0 bits (94), Expect = 2e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 127419 ATATGCTTCCGAAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTT 127478 |||||| || | | |||||| |||||| | || ||||| | ||| || | | |||| || Sbjct 46510905 ATATGCCTCGGCGACTTCTTTGAATTTTCGCTCTGCTTCCTCTTTATTTTCTGGATTTTT 46510964 Query 127479 ATCAGGATGATGTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTCTGCT 127530 ||||||||| ||||| |||| |||||| |||||| ||||||| ||| || Sbjct 46510965 ATCAGGATGCCATTTAAGTGCTACTTTACGATAAGCTCTTTTAATGTCTTCT 46511016 >seq26 Length=50160631 Score = 84.2 bits (92), Expect = 9e-11 Identities = 170/247 (69%), Gaps = 14/247 (6%) Strand=Plus/Plus Query 451893 TTGATGAAATTGTGCTTGTAGGA-GGTTCTACACGAATTCCTAAAATTCAAGATATGTTG 451951 || |||| ||||| |||| ||| |||||||| |||| || || ||||| | | || Sbjct 6910167 TTCATGATATTGT-CTTGGTGGATGGTTCTACCAGAATCCCCAAGATTCAGAAACTTCTG 6910225 Query 451952 T----CTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGT 452007 | |||||| | |||||| || ||||||| | || |||||||||||| | Sbjct 6910226 TGAGACTTCTTCAAT----GGAAAAGAATCGAATAAGAGCATTAACCCTGATGAAGCTAT 6910281 Query 452008 TGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAAT-TAG 452066 ||| ||| |||| || || || ||||| |||||| | | ||| | || ||| | Sbjct 6910282 TGCCTATAGTGCAGCTGTGCAGGCAGCCATTCTATC---TAGAGACGTCTAAGAATGTTC 6910338 Query 452067 GAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAA 452126 ||| | ||| | | ||||| || ||||| || ||||| ||||||| ||| ||||| Sbjct 6910339 AGGATTTGCTGCTCTTGGATGTCACTCCTCTTTCCCTTGGTATTGAAACTGCTAGTGGAG 6910398 Query 452127 TGATGAC 452133 | ||||| Sbjct 6910399 TCATGAC 6910405 >seq13 Length=116904986 Score = 84.2 bits (92), Expect = 9e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||| ||||| | ||| ||||||| Sbjct 35905421 GCAGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAG 35905480 Query 450974 GTAGAAATTATAGCAAATGACCAAGG 450999 || |||||||| || |||||||| || Sbjct 35905481 GTGGAAATTATTGCCAATGACCAGGG 35905506 >seq9 Length=107150856 Score = 84.2 bits (92), Expect = 9e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||| ||||| | ||| ||||||| Sbjct 27000144 GCAGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAG 27000085 Query 450974 GTAGAAATTATAGCAAATGACCAAGG 450999 || |||||||| || |||||||| || Sbjct 27000084 GTGGAAATTATTGCCAATGACCAGGG 27000059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975653064844748