Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2 215 4e-50 seq854 136 3e-26 seq13 131 1e-24 seq22 113 3e-19 seq26 111 1e-18 seq6 111 1e-18 seq4 100 2e-15 seq23 89.7 4e-12 >seq2 Length=163939365 Score = 215 bits (238), Expect = 4e-50 Identities = 795/1229 (65%), Gaps = 32/1229 (3%) Strand=Plus/Plus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| || |||| | |||||| ||||||||||||||||| | || | Sbjct 91325342 GTCATGACTCCACCAGCAGTTTNAATACCAAGGGAAAGAGGAGTGACATCCAAGAGCAGC 91325401 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || ||| || || | | ||| ||||| ||||| || | ||| |||||| Sbjct 91325402 AAATCCTGACCATTCCCAGACTTGTCTCCAGAGAGAATGGCTGCCTGGACAGCTGCACCA 91325461 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || |||||||||||||| || |||| | | ||| |||| ||| |||||||| || | | Sbjct 91325462 TAGGCAACAGCTTCATCGGGGTTAATGCTCTTATTCAGTTCTTTTCCATTGAAGAAGTCT 91325521 Query 517676 GAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 ||||||| ||| | ||| || || | | || || || || || ||| | ||||| Sbjct 91325522 TGCAGAAGTT-TCTGAATCTTGGGGATTCTGTA-GAACCACCCACCAAGACAGTATCATG 91325579 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | |||||| ||||||||||| | ||| | | || || || || || || | Sbjct 91325580 GATCTGTGACTTATCCAGTTTGGCATCTTGAAGGGCCTTCTCTACAGGGTCCAGTGTGCC 91325639 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 517854 | |||| ||| | | | ||| || || | ||| | |||| | | || | || Sbjct 91325640 ACGGAACAGGTCAGCATTCAATTCCTCAAACTGAGCCCGGGTAATGGAGGTATAGAAGTC 91325699 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAAGATAGTGCA 517912 |||||| || | | |||||||| ||||| | | || || | || ||| |||| Sbjct 91325700 AATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAGGGTGCT 91325759 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGATTGATT 517968 | || || | ||||| | || || || || | ||| | | || |||| Sbjct 91325760 C--TTGGCCCTCTCACAGGTGGTGTGGAGACTGCGGACAGCTCTCTTGTTCTCGCTGATG 91325817 Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTA 518026 || | || | |||| ||| || || |||| | ||| | || | || || Sbjct 91325818 ----TCCTTCTTGTGCTTTCGCTTAAACTCATCAATGAA--ATGGTTGACCATTCGGTTG 91325871 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| ||||| || ||||| | || | ||| | || | | | |||| |||| |||| Sbjct 91325872 TCAAATTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTTGATTTGACTTTAAAAATTCCA 91325931 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || |||| || | | |||||| || ||||| |||| |||||||| || ||| Sbjct 91325932 TCCTCAATAGTGAGGGCTGACACATCAAAAGTACCACCTCCCAAGTCAAAAATCAGCACA 91325991 Query 518147 TTCATTTC---TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 ||| |||| | || | | | ||||| | ||||| |||| ||||||||| ||||| Sbjct 91325992 TTCCTTTCAGCTCTGACCT---TCTTATCCAAGCCATAAGCAATAGCAGCAGCCATTGGT 91326048 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 ||||| | |||| | ||||| || || ||||| |||| |||||||| || || ||| Sbjct 91326049 TCATTGGTGATTCGAAGTACATTGAGGCCCGCAATAGTTCCAGCATCTTTTGTTGCCTGT 91326108 Query 518264 CTTTGTGAATCGTTAAAATATGCAG--GAACAGTAATAACGGCATCAGTTACT-TCTTTA 518320 | || || || || || || || | | | || || |||||| || || ||||| Sbjct 91326109 CGCTGAGAGTCATTGAAGTAAGCTGTGGTATTGTGTTA-CGGCATTGGTAACAGTCTTT- 91326166 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | || || ||| ||| ||||| || | | || ||| || || | || ||| Sbjct 91326167 CCGAGGTATGCTTCTGCAATTTCCTTCATCTTTGTCAGAACCATGGAGGACACTTCCTCT 91326226 Query 518381 GGGGA-ATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAAC 518439 ||| | | | | ||| | | | || | | |||| | | || | || | Sbjct 91326227 GGGTAGAAACTTTTTGTCTCCCATCTG-TGTTCCACTTGGACCTTGGGCCTGCCTGCATC 91326285 Query 518440 ATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATC 518499 ||| | || | || ||||||| |||||||| || |||| | |||| ||| Sbjct 91326286 ATTCACCACCATGAAGGGCCAGTGCTTCATATCAGACTGAANAACAGCATCATCAAACCT 91326345 Query 518500 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATA 518559 | | || | | ||| |||||||||| || ||||| || || |||||| | |||| Sbjct 91326346 ACGCCTGATCAGACATTTGGCATCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGATT 91326405 Query 518560 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 518619 ||||| ||||| ||||| | | ||||| || || || | ||| || || || || Sbjct 91326406 CTTGGCCGCATCCCCAATTAATCGCTCTGTGTCCGTGAAAGCAACGTAGCTCGGCGTGGT 91326465 Query 518620 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 || ||||| || ||||| ||| ||||||| || || |||| || | ||||| ||||| Sbjct 91326466 GCAGTTACCCTGGTCATTGGCACTAATTTCCACCTTTCCATGCTGGAAGACACCCACACA 91326525 Query 518680 ACTAAAAGTTGTTCCTAAATCAATACCAA 518708 | || || || | |||||| |||| Sbjct 91326526 GGAGTAGGTGGTGCCAAGATCAATNCCAA 91326554 >seq854 Length=65724 Score = 136 bits (150), Expect = 3e-26 Identities = 344/515 (67%), Gaps = 7/515 (1%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| | |||| ||||| || || ||||||||||| | ||||| || || ||||| Sbjct 43516 TTATCTACAGCAGAAACATTGAGGATGCCATTGGCATCNATGTCAAAAGTAACCTCAATC 43457 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| ||||| | | || || || || ||| | | ||| |||| || || Sbjct 43456 TGAGGAACCCCACGGGGTGCTGGAGGTATGCCTGTGAGCTCAAACTTTCCAAGCAGGTTG 43397 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATT 517428 || || || || | | |||||| || | | || || |||| | | | || || Sbjct 43396 TTGTCCTTGGTCATGGCCCTTTCACCTTCATACACCTGAATGAGTA-CACCTGGCTGGTT 43338 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 517487 ||| || || || || || |||| | | || || || || || || | | | Sbjct 43337 ATCAGAGTAGGTGGTGAANG-TCTGTGTCTGCTTGGTGGGGATGGTGGTATTGCGCTTGA 43279 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | ||||| | ||||| || ||||| | |||||| ||||||||||||||||| | Sbjct 43278 TGAGGACNGTCATGACTCCACCAGCAGTTTCAATACCAAGGGAAAGAGGAGTGACATCCA 43219 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || |||| || ||| | | | ||| ||||| ||||| || | | Sbjct 43218 AGAGCAGCAAATCCTGAACATTCTCAGAATTGTCTCCAGAGAGAATGGCTGCCTGGAC-G 43160 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| ||||||||||||| || |||| | | ||| |||| ||| ||||||| Sbjct 43159 CTGCACCATAGGCAACAGCTTCATTGGGGTTAATGCTCTTATTCAGTTCTTTTCCATTGA 43100 Query 517668 AAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 |||| | | ||||||| ||| | ||| || || | | || || || || || ||| Sbjct 43099 AAAAGTCTTGCAGAAGTT-TCTGAATCTTGGGGATTCTGGTAGAACCACCCACCAAGACA 43041 Query 517727 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 517761 || ||||| | |||||| || |||||||| | ||| Sbjct 43040 ATATCATGGATCTGTGACTTGTCCAGTTTGGCATC 43006 >seq13 Length=116904986 Score = 131 bits (144), Expect = 1e-24 Identities = 452/692 (65%), Gaps = 16/692 (2%) Strand=Plus/Minus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || ||||| ||||| | ||||| | || | ||| | || | | | |||| |||| | Sbjct 35912464 TTGTCAAAGTCTTCTGCACCCAAGTGGGTGTCTCCAGCTGTTGATTTGACTTCAAAAATT 35912405 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 ||||| |||| || | | | |||||| || ||| | |||| |||||| | || Sbjct 35912404 CCATCCTCAATAGTGAGGATTGACACATCAAAAGTGCCATCTCCCAAGTCAAAA-TCAGC 35912346 Query 518144 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 | |||| ||| | || |||| | |||| |||| |||||||||||||||| Sbjct 35912345 ATATTCCTTTAAGCTCCAACCTTCTTATTTAAGTCATAAGCAATAGCAGCAGCAGTTGGT 35912286 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 |||| ||||||| || ||||||| |||||||| |||| |||||||| || || || Sbjct 35912285 ACATTGATAATTCAAAATACATTAAAGCCAGCAATAGTTCCAGCATCTTT-GTTGCCTGA 35912227 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACC 518322 | || ||||| || || || || || || ||||| || |||| || || ||||| Sbjct 35912226 CCCTGAGAATCATTGAAGTAAGCTGGCACTGTAATCACAGCATTGGTAACAGTCTTT-TT 35912168 Query 518323 AATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 || ||||| | | |||| ||| || | | | || ||| || || | || |||| Sbjct 35912167 AAGGTAAGCTTCTCCAGTTTCTTTTATCTGTGTCAGAACCATGGAGGACACTTCCTCTGA 35912108 Query 518383 GGA-ATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 518441 | | | | | ||| | | |||| ||| |||| | | || | || ||| Sbjct 35912107 GTAGAAACTTTTTGTCTCCCCTTTG-TATTCAACTTGGACCTTAGGCCTGCCTGCATCAT 35912049 Query 518442 TAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTA--AAATC 518499 | | || |||| ||||||| |||| ||| || |||| | ||||| ||| | Sbjct 35912048 TCACCACCATAAAAGGCCAGTGCTTCAAATCAGACTGAAAA---ACAGCATTATCAAACC 35911992 Query 518500 T-CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGAT 518558 | | | || | | ||| ||||||||| || ||||| | || |||||| | | || Sbjct 35911991 TACGTCTGATCAGACATTTGGCATCAAAAGCTGTGTTGGTCAGGTTCATTGCAACCTAAT 35911932 Query 518559 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 518618 ||||||||||| |||| | |||||||| || || || | | | || || || | Sbjct 35911931 TCTTGGCTGCATCCCCAAATAATTGTTCTGTGTCAGTGAAAGCATCGTAGTTCGGCGTGG 35911872 Query 518619 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 | | ||||| || ||||| || || ||||| || || ||| | | ||||| |||| Sbjct 35911871 TACAGTTACCCTGGTCATTGGCTATTATTTCTACCTTTTCATGCTAGAAGACACCCACAC 35911812 Query 518679 --AACTAAAAGTTGTTCCTAAATCAATACCAA 518708 || || | | || || | |||||| |||| Sbjct 35911811 AGAAGTAGA--TGGTGCCAAGATCAATGCCAA 35911782 Score = 98.7 bits (108), Expect = 8e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| | ||||| |||| ||||||||||||||||||||| || |||| | ||| Sbjct 35906327 TTCTTATCCAAGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATTCGAAGTACA 35906268 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| |||| |||||||| || || |||| || || || || || || Sbjct 35906267 TTGAGGCCTGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAGTCATTGAAGTAA 35906208 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | ||||||| Sbjct 35906207 GCTGGCACTGTGACCACGGCAT 35906186 Score = 96.9 bits (106), Expect = 3e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| || ||||| || || |||||| | |||| ||||| ||||| || || | Sbjct 35905610 CAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGATTCTTGGCCGCATCCCCGATTAATC 35905551 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 | ||||| || || || | ||| || ||||| ||||| ||||| || ||||| |||| Sbjct 35905550 GCTCTGTGTCCGTGAAAGCAACGTAGCTCGGAGTGGTGCGGTTACCCTGGTCATTGGCAA 35905491 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 ||||||| || || |||| || | ||||| ||||| | || || || | ||||| Sbjct 35905490 TAATTTCCACCTTTCCATGCTGGAAGACACCCACACAGGAGTAGGTGGTGCCAAGATCAA 35905431 Query 518703 TACCAA 518708 | |||| Sbjct 35905430 TGCCAA 35905425 >seq22 Length=59539374 Score = 113 bits (124), Expect = 3e-19 Identities = 335/514 (65%), Gaps = 2/514 (0%) Strand=Plus/Minus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 |||||| | || || |||| || || || || || ||||| || ||||||| ||||| Sbjct 2901423 TTTATCCAAGCCGTAGGCAATGGCGGCCGCTGTGGGCTCATTGATTATTCTCAGCACATT 2901364 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 || || || || |||||||| || ||||| || | || || || || ||||| || Sbjct 2901363 GAGTCCTGCGATGACACCTGCATCCTTGGTGGCCTGCCGCTGAGAGTCATTGAAATAGGC 2901304 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346 || || || || || || | || || | | || | | |||| ||| || | || Sbjct 2901303 TGGCACCGTGATCACAGCGTTCGTGACATTGTGGCCCAAAAAAGCCTCTGCAGTCTCCTT 2901244 Query 518347 CATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCATTTT 518405 ||| || | | | ||| ||||| || | |||||| | | |||| | || || Sbjct 2901243 CATCTTCGTCAGTACCATGGATGAGATCTCCTCTGGGTAGAAG-GCTTTCTTCTCTCCTT 2901185 Query 518406 GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATT 518465 ||| || || | | || || | |||| || |||| ||||||||| | Sbjct 2901184 TATAGGACACCATCACCTTGGGCTTGCCTGCTTCATTGATCACTTGAAATGGCCAAAGCT 2901125 Query 518466 TCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAA 518525 |||||||||| || ||| | |||||||| | || ||||||| ||||| ||||||| Sbjct 2901124 TCATATCTGACTGCACAACAGGATCATTAAACTTCCTGCCAATTAGACGTTTGGCATCAA 2901065 Query 518526 AAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT 518585 ||| ||| || ||||| || || | || | ||||| || || || || || | | Sbjct 2901064 AAACAGTGTTTTGGGGATTCATGGCCACCTGGTTCTTGGCAGCGTCGCCGATGAGGCGCT 2901005 Query 518586 CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAA 518645 | || || || || | ||||| || || ||||| || || || || || || || | Sbjct 2901004 CGGTGTCGGTGAAGGCCACATAGCTGGGGGTCGTGCGGTTGCCCTGGTCGTTGGCGATGA 2900945 Query 518646 TTTCAACTTTACCATTTTGCCATACACCTACACA 518679 | || || || || | || | || || ||||| Sbjct 2900944 TCTCCACCTTGCCGTGCTGGAACACGCCCACACA 2900911 >seq26 Length=50160631 Score = 111 bits (122), Expect = 1e-18 Identities = 187/267 (70%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | |||| || ||||| | |||||| ||||||||||||||||| | || | Sbjct 6910405 GTCATGACTCCACTAGCAGTTTCAATACCAAGGGAAAGAGGAGTGACATCCAAGAGCAGC 6910346 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || |||| || | | || | | | ||||| ||||| || | ||| |||| | Sbjct 6910345 AAATCCTGAACATTCTTAGACGTCT--CTAGATAGAATGGCTGCCTGCACAGCTGCACTA 6910288 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || |||| |||||||||||| |||| | | ||| || ||| |||||||| || | | Sbjct 6910287 TAGGCAATAGCTTCATCAGGGTTAATGCTCTTATTCGATTCTTTTCCATTGAAGAAGTCT 6910228 Query 517676 GAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 | ||||||| ||| | ||| || || | | || || | || || ||||| ||||| Sbjct 6910227 CACAGAAGTT-TCTGAATCTTGGGGATTCTGGTAGAACCATCCACCAAGACAATATCATG 6910169 Query 517735 CACCTGTGATTTATCCAGTTTTGAATC 517761 |||||||| || || ||||| | ||| Sbjct 6910168 AACCTGTGACTTGTCTAGTTTAGCATC 6910142 >seq6 Length=146485248 Score = 111 bits (122), Expect = 1e-18 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 518514 GTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTC 518573 |||| ||||||||||| || ||| | ||||| ||||| | |||| ||||||||||| | Sbjct 36023669 GTTTGGCATCAAAAATTGTGTTGTTGGGATTCATTGCTACCTGATTCTTGGCTGCATCCC 36023728 Query 518574 CAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGAT 518633 |||| | || ||||| | | || | |||||| || || ||||| |||| |||| Sbjct 36023729 CAATTAATTGCTCTGTGTTACTGAAAGCAACATAGCTCGGTGTGGTGCGGATACCCTGAT 36023788 Query 518634 CATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTC 518693 |||| ||||| ||||| || || |||| || | ||||| ||||| | || || | Sbjct 36023789 CATTGGCAATTATTTCCACCTTTCCATGCTGGAAGACACCCACACAGGGGTAGGTGGTGC 36023848 Query 518694 CTAAATCAATACCAATAGCAA 518714 | | |||||| |||| |||| Sbjct 36023849 CAAGATCAATGCCAACTGCAA 36023869 >seq4 Length=164141553 Score = 100 bits (110), Expect = 2e-15 Identities = 761/1217 (63%), Gaps = 57/1217 (5%) Strand=Plus/Plus Query 517506 CACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA 517565 |||| || ||||| | |||||| |||||||||||||||| | || | | |||| Sbjct 24374680 CACCAGCAGTTTCAATACCAAGGAAAAGAGGAGTGACATCCAAGAGCAGCGAACCCTGAA 24374739 Query 517566 GTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAG 517625 || ||| | | || | ||| |||| || | ||| ||||||| ||||||| Sbjct 24374740 CATTCTCAGACTTGTCTCCTGATAAAATGACTGCCTGGACAGCTACACCATAAGCAACAG 24374799 Query 517626 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 517685 |||||||||| |||| | | ||| |||| |||||||||||| || | | |||| || Sbjct 24374800 CTTCATCAGGGTTAATGCTCTTATTCAGTTCTTTACCATTGAAGAAGTCTTGCAGAAATT 24374859 Query 517686 GTCTTA-CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 ||| | ||||| || | | || || || || || ||||| | ||| | |||||| Sbjct 24374860 -TCTGAGTCTTAGAGATTCTGGTAGAACCACCCACCAAGACAATATAATGGATCTGTGAC 24374918 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804 || || ||||| | ||| | || || || || | || | | |||| | Sbjct 24374919 TTGTCTAGTTTGGCATCTTGAAGGACCTTCATTACAGGGTTGAGTGTGCCACAGAACATG 24374978 Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864 || | | |||||||| |||||||| | | || | | || | ||| |||| || Sbjct 24374979 TCAGCATTCAGTTCTTCAAATTTAGCCCAGGAAATGGAGGTATAGAATTCAGTTCCCTCA 24375038 Query 517865 AACAAAGAATCAACTTCAATCGTAGTTTGAGT--CGAAGAAGATAGTGCACGTTTAGCAC 517922 | | ||||| || ||||| | | || || | || | | ||| | || || | Sbjct 24375039 TAGAGAGAATAAATCTCAATACTGGCCTGGGTGCTGGAGGAAAGGGTGAA---TTGGCCC 24375095 Query 517923 GTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGT-TTTA 517981 ||||| || || | || | | | ||| | || || ||| ||| || Sbjct 24375096 ACTCACAGGCAGTGCAGAGGCGCCTGACAGCTCT--CTAGTT--CTCACTGATGTCCTTG 24375151 Query 517982 TATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCAC 518039 | || | ||| || | ||| | ||| ||| | | || ||||| ||||| Sbjct 24375152 TGCTTCCCCTTAAATTTAGCAATGAA--ATGGTTTAACATTCAGTTGTCAAAGTCTTCTT 24375209 Query 518040 CTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACA 518099 | ||||| | || | ||| | | | | | |||| |||| |||| | ||| || | Sbjct 24375210 CACCCAAGTGGGTGTCTCCAGCTATTGATTTGACTTCAAAAATTCCAGCCTCAGTAGCGA 24375269 Query 518100 AAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGT 518159 | | ||||| || ||||| |||| |||||||| || |||||| ||||| Sbjct 24375270 GGATTGACCCATCAAAAGTGCCACCTCCCAAGTCAAAAATCAGCACATTCCTTTCT---- 24375325 Query 518160 CTTGGTTTTTATCAAGACCATACGCAA---AAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 ||| ||||| |||| ||||||||||||||||||||| |||||| Sbjct 24375326 -------------AAG-CCATAAGCAATAGCAGCAGCAGCAGTTGGTTCATTGATAATTT 24375371 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 | |||| || ||||||| ||| |||||||| || || || || || || || | Sbjct 24375372 GAAGTTCATTGAGGCCAGCAACAGTTCTAGCATCTTTTGTTGCCTGGCTCTGAGAGTCAT 24375431 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTT 518335 ||||||| || || || || | || |||| | || ||||| |||| ||||| | Sbjct 24375432 TAAAATAGGCTGGCACTGTGACCACAGCATTGTTCACAGTCTTT-CCAAGGTAAGCTTCT 24375490 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATATTGCT 518393 || ||| ||||| || | | || |||||| || | || ||| | ||| | | | Sbjct 24375491 GCAATTTCCTTCATCTTTGTCAGAACCATTGAGGACACTTCCTCTAGTTAGAAAACT-TT 24375549 Query 518394 TGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAA 518453 || | | |||| | | |||| | | || | || |||| | || | | Sbjct 24375550 TGTCTCCCCTTTGCACTCA-ACTTGGACCTTGGGCCTGCCTGCATCATTCAGCACCATGA 24375608 Query 518454 ATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA---ATCTCTACCAATTA 518510 | | ||||| |||||||| || |||||| |||| ||| || ||| || | Sbjct 24375609 AGGACCAGTGCTTCATATCAGACTGAACAACAGCATCATCAAACCTATGTCT---GATCA 24375665 Query 518511 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCAT 518570 | ||| |||||||||| || || | | || |||||| |||||| ||| Sbjct 24375666 GACATTTGGCATCAAAAACTGTGTTCATGAGGTTCATTGCAACTTGATTCTTG------- 24375718 Query 518571 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 518630 ||||| | |||||||| || || || | | |||| | | |||| ||||| | Sbjct 24375719 -CCCAATTAATTGTTCTGTGTCAGTGAAAGCAGCATAGCACTCTGGGGTGCAGTTACCCT 24375777 Query 518631 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 518690 | ||| | ||||| ||||| || || |||| || | ||||| ||||| | || | Sbjct 24375778 GGTCACTGGCAATTATTTCCACCTTTCCATGCTGGAAGACACCCACACAGGAGCAGGTGG 24375837 Query 518691 TTCCTAAATCAATACCA 518707 | || | |||||| ||| Sbjct 24375838 TGCCAAGATCAATGCCA 24375854 Score = 95.1 bits (104), Expect = 9e-14 Identities = 216/318 (68%), Gaps = 18/318 (6%) Strand=Plus/Minus Query 517087 GTGAGTATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCT 517144 || || ||| |||| |||||||| | | |||| || ||| ||| ||| || ||| Sbjct 22068158 GTAAGCATAGCTTTCCAATTCATTCCTGGTGTCAAT-GC-GCTCTTTGAGCTTTTTGTCT 22068101 Query 517145 GCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTT 517204 | || |||| | | ||| || ||| ||| || ||||||| |||||| | || Sbjct 22068100 TCCTCAGCAAACTTCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAG-GTGTCAG 22068045 Query 517205 CCGCGATT----ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA---TTTATCAGC 517257 || || ||| ||||| || || || || ||||||| || ||| || | Sbjct 22068044 GCGGTTTTGGTCATTGGTAATTGTGATTTTGTT---TTTGTTTCCTGTACCTTTGTCTTC 22067988 Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 || ||||| |||||||||||| |||| | ||||| |||||||||||||| || || Sbjct 22067987 AGCTGTCACTCGAAGAATACCATTAACATCTATCTCAAAGGTGACTTCAATTTGGGGAAC 22067928 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 || | ||||||| || || || || || ||||||||||||| || ||| ||||| Sbjct 22067927 TCCGCGGGGAGCAGGAGGAATTCCAGTCAGATCAAATGTTCCCAGAAGATGATTGTCTTT 22067868 Query 517378 AGTGAATTTTCGTTCACC 517395 || | ||||||||| Sbjct 22067867 TGTTAGGGGTCGTTCACC 22067850 >seq23 Length=89631738 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || | || ||||| ||||| ||||||||| | || || | ||||| Sbjct 50486195 TGTCGTAGCTACTGTTGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 50486136 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| ||||| || |||||||||||||| || || Sbjct 50486135 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTACCAGGAAATTGGTAGAGCTGGCCG 50486076 Query 367113 TGATGGA 367119 |||||| Sbjct 50486075 GGATGGA 50486069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780694322278186