Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 113 5e-20 seq10 86.0 7e-12 >seq1 Length=172151128 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| ||| |||||||||| ||||||||||||| |||| | || || ||||| Sbjct 73310456 CTCATCTTTACTGGTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCC 73310397 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| ||| || | ||| |||||||||||||| || || || Sbjct 73310396 CAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACC 73310337 Query 106612 CGTCTCCGTCTGTGACT 106628 |||||||||||| |||| Sbjct 73310336 CGTCTCCGTCTGGGACT 73310320 >seq10 Length=113323912 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| ||||| |||||||||||||||||||| |||||||| || || || |||||||| Sbjct 23467781 ATACTCCCCTACTCGCTTCTCAAAGAAGTTCGTCTTCCCTTCGAGTGAGATATTTTCCAT 23467722 Query 117045 AAAGTCAAATGGATT 117059 |||||||||||||| Sbjct 23467721 GAAGTCAAATGGATT 23467707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589961765744440