Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq22 86.0 5e-12 >seq22 Length=59539374 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 351 TCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTGCC 410 ||||||| ||||| || || ||| | ||||| | | ||| || | | |||||| Sbjct 3941062 TCATGTTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTGCC 3941121 Query 411 CACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAGTC 470 |||||||| || |||||||| || || |||||||| ||||| || || | | | | Sbjct 3941122 CACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCACAAGCTCCGTGTCCTGGGAC 3941181 Query 471 AGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGGCC 530 || | |||| | || | ||||| || | ||| ||||| ||||| ||||| || |||| Sbjct 3941182 AGATCCTCTCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAACCCAGGGCC 3941241 Query 531 CAACA 535 || || Sbjct 3941242 CAGCA 3941246 Score = 86.0 bits (94), Expect = 5e-12 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 347 TGCCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGC 406 ||||||||||| ||||| || || ||| | || || | | ||| || | | || Sbjct 4967435 TGCCTCATGTTGCACATGGCATGTGTATCTCTGTTCCTCTCCAGAAGGCACCACCACAGC 4967494 Query 407 TGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATC 466 |||||||||||| || |||||||| || || |||||||| || | | ||| | | Sbjct 4967495 TGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCAATGAGGTCCATGTCCTG 4967554 Query 467 AGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAG-CCAG 525 ||||| | ||| | || | ||||| || | | ||||| ||||| |||||| |||| Sbjct 4967555 GGTCAGGTCCTCCTCATCCCTCTGCCAGGTCAGCATGATGTCAGCAGGGTAGAAGNCCAG 4967614 Query 526 TGGCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCT 585 |||||| || | || || |||| || |||||| | | || |||||| || ||| Sbjct 4967615 -GGCCCAGCACCTCAGGGTGACTTCACCTTCAGGTCTGGGGTGATGGGTCACATGTGCCT 4967673 Query 586 GTGGAG 591 |||| Sbjct 4967674 TCGGAG 4967679 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || || ||||| || ||| || | | | || Sbjct 3956494 CCTCATGCTCCACATGGCATGTGTAATTCTGCTCCTTCCCAAGAGGCACCACCACAGATG 3956553 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| ||||| || ||| | | | Sbjct 3956554 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 3956613 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || ||||| || | ||| ||||| ||||| |||||||| || Sbjct 3956614 TCAGCTCCTCCCCATTCAACTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCCAGGG 3956673 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGTG 588 |||| || | || || || | || |||| | | | || |||||| || || || Sbjct 3956674 CCCAGCACCTCAGGGTGACNTCACCTTCAGATCTGGGGTGATGGGTCACATGTGTCTTTG 3956733 Query 589 GAG 591 ||| Sbjct 3956734 GAG 3956736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||| ||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 4128988 CCTGATGGTCCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 4129047 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || || ||||| || || || ||||| ||||| || ||| | | | Sbjct 4129048 CCCACTTCTGGAAGGTCCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCTTGGG 4129107 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAG-CCAGTG 527 |||| | |||| || | ||||| || | ||| ||||| ||||| |||||| |||| | Sbjct 4129108 TCAGGTCCTCTCGATCCTTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGTCCAG-G 4129166 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAGGT 560 ||||| || | || || || | || |||||| Sbjct 4129167 GCCCAGCACCTCAGGGTGACATCACCATCAGGT 4129199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397734688488936