Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4 118 2e-21 seq9 109 1e-18 seq1 109 1e-18 seq17 95.1 3e-14 seq16 89.7 1e-12 seq15 87.8 4e-12 seq13 86.0 1e-11 >seq4 Length=164141553 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| || ||||| ||||| || ||||| || | | ||| | Sbjct 18056552 AGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGG 18056611 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||||| | | || || || |||||||| ||||| Sbjct 18056612 CCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCC 18056671 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || |||||||| ||| || || || || Sbjct 18056672 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 18056731 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| || | || || || || | ||||| Sbjct 18056732 ATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| || ||||| ||||| || ||||| || | | ||| | Sbjct 99334565 AGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGG 99334624 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||||| | | || || || |||||||| ||||| Sbjct 99334625 CCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCC 99334684 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || |||||||| ||| || || || || Sbjct 99334685 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 99334744 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| || | || || || || | ||||| Sbjct 99334745 ATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 Score = 96.9 bits (106), Expect = 8e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||||||||| | ||||| ||||||| ||||| || | | ||| | Sbjct 31007714 AGTCTCAACACAAGGTGAAGGATAGACTCCGTTTGAATGTTGTAGTCAGACAAAGTACAG 31007773 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||||| | | || || || ||| ||| ||||| Sbjct 31007774 CCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAAGAAGTCCTTCA 31007833 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || | || || || ||| || || || || |||||||| Sbjct 31007834 TTATTCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 31007874 Score = 87.8 bits (96), Expect = 4e-12 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||| || || || | ||||||||||| || || ||||| || | || || | Sbjct 128787403 AGACTCAGCACCAGTTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCAG 128787344 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || ||||| || ||| | || || || | | ||||| || || |||||||| Sbjct 128787343 CCATCCTCCAGCTGTTTGCCT-CAAATATCAGCCTCAGCTGGTCAGGTGGGATGCCTTCC 128787285 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 |||||||| || || |||||| ||||| |||||||| Sbjct 128787284 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC 128787247 >seq9 Length=107150856 Score = 109 bits (120), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||| || || ||||| || | || || ||||| || Sbjct 83841074 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCATCCTCC 83841133 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || ||||| || || | || ||||| || || |||||||| |||||||| Sbjct 83841134 AGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 83841193 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| || || ||||| || | ||| Sbjct 83841194 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTC 83841250 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 83841251 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 83841282 Score = 100 bits (110), Expect = 6e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||| || || ||||| || | || || ||||| || Sbjct 80898462 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCATCCTCC 80898521 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || || || || || || | || ||||| || || |||||||| |||||||| Sbjct 80898522 ACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 80898581 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| || || ||||| || | ||| Sbjct 80898582 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTC 80898638 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 80898639 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 80898670 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGA---GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 |||||||| ||||||||| || || ||||| |||||||| ||||| || | | ||| Sbjct 86261801 AGTCTCAACACAAGGTGAGGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 86261860 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | | |||||| ||||||||||| || ||||| | | || || || ||| ||| ||| Sbjct 86261861 CGGCGATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGA-GAAGTCCT 86261919 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || || || | | || ||| || || || || |||||||| ||| | || || Sbjct 86261920 TCCTTATCCTAGGTCTTGGACTTTACATTATCTATAGTGTCCGAGGGTTCATCCTCGAGC 86261979 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | | ||| ||||| | || || || || | ||||| Sbjct 86261980 GTGATGGCCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 86262020 >seq1 Length=172151128 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTA-ATCGGCAAGAGTTCT 194981 |||||||| |||| ||||| || ||||| |||||||| ||||| | | ||| ||| | Sbjct 144045275 AGTCTCAACCCAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGAAAGACAA-AGTACG 144045333 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| ||||||||||| || ||||| | || || | || |||||||| ||||| Sbjct 144045334 GCCATCTTCCAGCTGCTTACCCGCAAAGATCAATCTCTGCTCATCAGGAGGAATTCCTTC 144045393 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || ||| || || || || |||||||| ||| || | || | Sbjct 144045394 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCTT 144045453 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| || || || || || || | ||||| Sbjct 144045454 GATGGTTTTTCCCGTAAAGGTCTTCACAAAAATCTGCAT 144045492 >seq17 Length=88915856 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||| || | |||||||| | || || | ||||| || Sbjct 64220002 ACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGACAGGGTGCAGCCATCCTCC 64220061 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || || || || | || ||||| || || | |||||| |||||||| Sbjct 64220062 AGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCCTTGTCTTGG 64220121 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| ||||| || ||| || |||||||| || | ||| Sbjct 64220122 ATCTTGGCCTTGACATTCTCGATGGTATC---ACTGGGCTCTACTTCAAGAGTGATGGTC 64220178 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||| || || || || | ||||| Sbjct 64220179 TTGCCCATCAGGGTCTTCACAAAGATCTGCAT 64220210 >seq16 Length=96704406 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGG-TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||||| |||||| | ||| || |||||||||||||| |||| || | | ||| Sbjct 4426008 AGTCTCAACACAAGGCTAAAGGGTAGACTCTTTTTGAATGCTGTAGTCAGAGAAAGTATG 4425949 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||||| ||||| ||||| || ||||| || | || || || |||||||| | ||| Sbjct 4425948 GTCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCTTTC 4425889 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || | || ||| || || || | |||||||| ||| || || || || Sbjct 4425888 CTTATCCTGGGTCTTGGCCTTTACATTTTC--TAGTGTCCGAGGATTCAACCTCCAGTGT 4425831 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | || || || || || || || || || Sbjct 4425830 GATGGTTTTCCCCGTAAAGGTCTTCACAAA 4425801 >seq15 Length=89017189 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/129 (76%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || ||||| ||||| ||||| ||| |||| |||||||| || || || |||| | | Sbjct 12733313 AGGCTCAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTATAGTCA--AAGAAGTATG 12733256 Query 194983 -CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| ||||||||||| || ||||| || | || || || |||||||| ||||| Sbjct 12733255 GCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTGTGCTGATCAGGAGGAATTCCTTC 12733196 Query 195042 TTTGTCTTG 195050 || || || Sbjct 12733195 CTTATCCTG 12733187 >seq13 Length=116904986 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/202 (70%), Gaps = 10/202 (5%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCA--AGAGTTCTCCCATCTTCGAGCTGCTTAC 195001 ||||||||||| || || ||||| | ||| || || | ||||| || |||| || | Sbjct 35782760 GTGGACTCTTTCTGGATGTTGTAGT--GCAACAGGGTGCGGCCATCCTCCAGCTCTTTGC 35782817 Query 195002 CTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCT 195061 || || || || | || ||||| || || |||||||| |||||||| || || || Sbjct 35782818 TGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 35782877 Query 195062 TGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||| ||||| |||||||| ||| || || ||||| || | ||||| || |||| Sbjct 35782878 TGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCCGTCA 35782934 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 || || || || | ||||| Sbjct 35782935 GGGTCTTCACAAAGATCTGCAT 35782956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109444910483627