Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 114 8e-21 seq9 114 8e-21 seq17 107 1e-18 seq4 93.3 3e-14 >seq13 Length=116904986 Score = 114 bits (126), Expect = 8e-21 Identities = 144/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||| | | ||| | || |||| ||||||| ||| | ||||||| Sbjct 35782766 TCTTTCTGGATGTTGTAGTGCAACAGGGTGCGGCCATCCTCCAGCTCTTTGCTGGCAAAT 35782825 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || |||||||| ||||| ||||| || Sbjct 35782826 ATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--AT 35782883 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| || | || ||||| || ||||| || ||||||| Sbjct 35782884 TCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCA 35782943 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 35782944 CAAAGATCTGCATGTT 35782959 >seq9 Length=107150856 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| |||||||| ||| | | |||| ||| Sbjct 80898462 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCATCCTCC 80898521 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||| ||||||||||| || | |||||||| | || | || |||||||| Sbjct 80898522 ACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 80898581 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | || ||||| | Sbjct 80898582 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCT 80898639 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||||| || |||||||| ||||||||||| || Sbjct 80898640 TGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 80898673 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| |||||||| ||| | | |||| ||| Sbjct 83841074 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCATCCTCC 83841133 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||| ||||| || | |||||||| | || | || |||||||| Sbjct 83841134 AGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 83841193 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | || ||||| | Sbjct 83841194 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCT 83841251 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||||| || |||||||| ||||||||||| || Sbjct 83841252 TGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 83841285 >seq17 Length=88915856 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||| || | || |||| ||| | ||| |||||||| |||| || || || Sbjct 64219984 CCACCCCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGAC 64220043 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | | |||| ||||||||||| ||||||||||| || | |||||||| | || Sbjct 64220044 AGGGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 64220103 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| ||||| || || || | |||| || ||| | Sbjct 64220104 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTATCACTGGGCTCTA 64220161 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | || ||||| || ||| | || |||||||||||||||||||| || Sbjct 64220162 CTTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 64220213 >seq4 Length=164141553 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/196 (71%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||||||| ||| | | |||| ||||||||||| || ||||| Sbjct 128787376 TCTTTCTGGATGTTGTAGTCCGACAGGGTGCAGCCATCCTCCAGCTGTTTGCC-TCAAAT 128787318 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||| | || | || |||||||| ||||| ||||| || Sbjct 128787317 ATCAGCCTCAGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--AT 128787260 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| || | || ||||| || ||| | || ||||||| Sbjct 128787259 TCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCA 128787200 Query 34969 CAAAGATCTGCATATT 34984 ||||||| ||| || Sbjct 128787199 GGAAGATCTACATGTT 128787184 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 34795 TCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTA 34854 |||| |||| |||||||| ||| | | |||| ||||||||||| | ||||||||| | Sbjct 149231664 TCTGGGTGTTGTAGTCCGACAGGGTGCAGCCATCCTCCAGCTGTTTGCTGGCAAATATCA 149231723 Query 34855 GTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTA 34914 | | |||||||| | || | || |||||||| ||||| ||||| || | Sbjct 149231724 GCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--AT--TC 149231779 Query 34915 TCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC- 34969 ||||| |||| || ||| || || | || ||||| || ||||| || |||||||| Sbjct 149231780 TCGATGTTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACG 149231839 Query 34970 ---AAAGATCTGCATATT 34984 ||||||||||| || Sbjct 149231840 AAGGAAGATCTGCATGTT 149231857 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| |||||||| | | || |||| |||||||| || || ||||| Sbjct 18056579 TCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAG 18056638 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||| || | || | || ||||| || ||||| || || | Sbjct 18056639 ATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 18056698 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || || ||||| |||| || |||||||||||||| || ||||||||| Sbjct 18056699 TCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACA 18056758 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 18056759 AAAATCTGCAT 18056769 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| |||||||| | | || |||| |||||||| || || ||||| Sbjct 99334592 TCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAG 99334651 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||| || | || | || ||||| || ||||| || || | Sbjct 99334652 ATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 99334711 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || || ||||| |||| || |||||||||||||| || ||||||||| Sbjct 99334712 TCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACA 99334771 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 99334772 AAAATCTGCAT 99334782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324623388345768