Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 226 3e-54 seq1997 206 3e-48 seq21 120 3e-22 seq10 113 5e-20 >seq9 Length=107150856 Score = 226 bits (250), Expect = 3e-54 Identities = 629/955 (66%), Gaps = 35/955 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCA---TTACTCCCAT 18668 ||| || ||| ||||||| | ||||||||||||| || | ||||| | |||| ||| Sbjct 26404177 TTAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTT-ATCA-AATTCGACCTGACTCTCAT 26404234 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | || || ||| | ||| || |||||||| || || ||||| | || ||| ||| Sbjct 26404235 CCTCTGCTACTCGCCTCCTCGCTTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATT 26404294 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| || ||||||||||||| ||| | | || || || || || | || | | Sbjct 26404295 TTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTATTAAAACCCAGCTCCAGCAT 26404354 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || || || || ||||||| || || ||||||| | ||||||| | || | Sbjct 26404355 AAGCCTGTCGGCCACAAATTCAAAGTACTGCTTCATCAAAGTGTAATTCATCCAGATGAG 26404414 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||| ||||| | || | | || || | || ||||| | || | | | || || Sbjct 26404415 TTTCACAGGCAAGGCCTTGATGAGGAACGCCTGCTCTATCCTAACCACGTTGGCGATTAT 26404474 Query 18909 AGATACAACTCTAT-CTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | |||| | ||| | || || || || || || || |||| || ||| Sbjct 26404475 TTCTTTTCCTCTCTGCTTTGAT-GGCTTGTGTACCAGGTGCTTGAAAATCAGGCAGACAA 26404533 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC- 19026 | || || | || ||||||||||| || || | ||||| | |||||| | || ||| Sbjct 26404534 AGTCCCAGTATAAACCCTCGTCTCTGCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCT 26404593 Query 19027 -----------ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG--A 19073 | ||||| | ||| || | ||||||| | ||||||| |||| | Sbjct 26404594 CATTGGAAAATGTAAGTCCCCGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAA 26404653 Query 19074 AAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT 19133 ||| || || ||||||| | ||||| || || | ||||| ||| | || |||| Sbjct 26404654 AAAAAAAATTGCTTCTACCTCGGCAAAGGCCACAACTCTTTGTCC----CCAG-TGCATT 26404708 Query 19134 ATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTAT 19193 | | |||| || ||||||||||| |||||||| ||| |||||||| || || Sbjct 26404709 GTCCCCACTCCAAGGCAAGGCCCAATCAGCATTCTTTTT---ACAAGGCATTGTTTCAAT 26404765 Query 19194 AGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 || ||| || |||||| | || | | ||||||| || | || || | | ||| Sbjct 26404766 AGCATTGAAGAGATACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACT 26404825 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 ||| ||||| || || || ||||| || || || || || || || ||||| | | || Sbjct 26404826 GTATATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTC 26404885 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 ||| | || ||||| | |||| | |||| |||||| | ||||| ||||||| Sbjct 26404886 TGTAACTTGAACTTCTTGGCTGAATCGCT---CCAAGTTTTCACTGACTATGCCATCACA 26404942 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTAT 19432 ||||||| || || | || || |||||||||| | ||| || |||| || | | Sbjct 26404943 CACTGCAAAGAAAGCCAGAACGTGAGCAATAAAATGTCTCTCA--TGGGGTTCAAAGCTT 26405000 Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 ||| | | |||||| || || | || || | ||| | |||||||| || ||||| | Sbjct 26405001 CCCAGTGCTGAATATCCTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAG 26405060 Query 19493 CTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 |||| || ||||| | ||| |||||| | || | || ||||| | | |||| || Sbjct 26405061 CTTTCTTGTACATCTGCCAGATATCATGGTACTCAATGGGAAAGACAGCAAAGCT 26405115 >seq1997 Length=85722 Score = 206 bits (228), Expect = 3e-48 Identities = 608/925 (66%), Gaps = 18/925 (2%) Strand=Plus/Plus Query 18623 CATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCATTTTTTGATATT 18679 |||||| | ||| ||||||| | | ||||| ||| ||||||| | | | | | Sbjct 33320 CATCCAGGGTAAAGGAATTCTTTG---TCGAATTTGACATGGCTCCCATCCTCTTACACT 33376 Query 18680 CGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAAT 18739 | | |||| || |||||||| || || ||||| |||| ||| | | |||| | | | Sbjct 33377 CACCTACTCACTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAACATTTTCCTTGACGT 33436 Query 18740 CAAATGGATTTTTT-ACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCC 18798 ||||||||||||| || | | || || || | || | || | | || || || Sbjct 33437 CAAATGGATTTTTCCACTCTGAAAATCTTGTTAAGACCCAGCTCCAGTGTCAGCCTGTCA 33496 Query 18799 GCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGT 18858 | | ||||| ||| || ||||||| | |||||| | || | | || ||||| Sbjct 33497 GTCAAAAATTCAATGTACTGCTTCATCAAAGTGCAATTCGTCCCGAAGAGCTTCACAGGC 33556 Query 18859 AGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACT 18918 | || | || || || ||||| ||||| | || | | | | || | ||| Sbjct 33557 AAGGCCTTCGTGAGGAACTCTTGCTCTATCCTAACCGTGTTGGTGTTTATTTCTTTTACT 33616 Query 18919 CTAT-CTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATG 18977 || | || || | || || || | || || |||||| | ||||| || || || Sbjct 33617 CTTTGCTCCAAT-GGCTTGTGTACCTGGTGCTTGAACATCGGGCGGGCAAAGTCCCAGTG 33675 Query 18978 TAGTCCCTCGTCTCTA-CTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTC 19036 || ||||||||||| || || | ||||| |||||||| | || |||||||| | | Sbjct 33676 TAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAAAATGTAAGGCCTGGCATCAGACTGC 33735 Query 19037 ttttttttAACCAGAAT-ATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCT 19095 || || | ||||| | || || ||||| || ||||||||||| || | ||| || Sbjct 33736 GATTCTTGAGCCAGAGTTATCGATGCAAAAGAACCAGAAAAGAAGATTCTTTCCACCATG 33795 Query 19096 GCAAAAGCAACTAGTCTTTCTCCATAACTAGCA----TCATTATTATGAATCCATTTCAG 19151 ||||| | || | || ||||||| || || || | |||||| || Sbjct 33796 GCAAAGACCACAACTCATTCTCCAATGTCCCCAATTCTCCTTGTCCCCAATCCAACACAA 33855 Query 19152 TGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACAT 19211 ||||| ||||||||||| || ||||| |||||||| | |||| ||| || ||||| Sbjct 33856 GGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATAGCATTGAAGAGATATTC 33915 Query 19212 ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAAT 19271 | || | | |||||||| || | || || | | |||||||||||| || | | Sbjct 33916 TCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAAGGAGACTGTACATTTCAGAGTATAC 33975 Query 19272 ATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACT 19331 || || || || || || || || || ||||| | || ||||| | || ||||| Sbjct 33976 GTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTG 34035 Query 19332 ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAA 19391 | ||||| || ||||| |||||||| ||||| ||| |||| ||||||||| || | Sbjct 34036 GCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCACCACTCATTGCAAAAAA-GCCAG 34094 Query 19392 TACATGTTTAATAAAATGTTTTTCATCTGAGGT-TAATGTATTCCAATCATTAATATCTT 19450 || || |||| |||| | ||||| | | | || | ||||| | | |||| | | Sbjct 34095 AACGTGAGATATAAGATGTCTCTCATCGGGTTTCTGATCT-TTCCAGTGTTGAATAGCCT 34153 Query 19451 TAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCC 19510 | || | || || || || | |||||||| || | ||| ||||| || ||||| | || Sbjct 34154 TGGAAATGTCCACCTCCTCGGCAGTCCAAAAGGAGGTCTCAGCTTTCTTGTACATTTGCC 34213 Query 19511 ATATATCACGATATTGTATAGGAAA 19535 |||||| | |||| || ||||| Sbjct 34214 TGATATCATGGTATTCAATGGGAAA 34238 >seq21 Length=68186955 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || || || || |||| |||||| ||||| || | |||||||| || ||||| || ||| Sbjct 4933595 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 4933654 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||| | ||||||||||||||| ||||| || |||||||| || ||||| || Sbjct 4933655 AGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCT 4933714 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 4933715 ACCACTCTTTCCCC 4933728 >seq10 Length=113323912 Score = 113 bits (124), Expect = 5e-20 Identities = 115/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||||| |||||||| | || ||||||||||| | ||| | Sbjct 23466445 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 23466386 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || |||||||| || ||||| | Sbjct 23466385 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 23466326 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCA 19131 | || | || ||||| || | ||| ||| Sbjct 23466325 CCACAACTCGCTCTCC-TAGCAAGCGTCA 23466298 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 18608 ATGGTTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTC 18664 ||| | | || ||| ||||||| | |||||||||||| | ||||| ||| |||| Sbjct 23467848 ATGCTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTG---TCGAATTTGACATGACTC 23467792 Query 18665 CCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATA 18724 |||| | ||||| || | |||| || |||||||| || || || || || | ||| | Sbjct 23467791 CCATCCTCTGATACTCCCCTACTCGCTTCTCAAAGAAGTTCGTCTTCCCTTCGAGTGAGA 23467732 Query 18725 TACATTCCATAAAATCAAATGGATTTTTTAC 18755 || |||||| || ||||||||||||| ||| Sbjct 23467731 TATTTTCCATGAAGTCAAATGGATTTTCTAC 23467701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562090664964840