Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq1827 113 6e-20 seq734 111 2e-19 seq1572 105 8e-18 seq1257 95.1 2e-14 seq22 95.1 2e-14 seq1296 93.3 5e-14 seq879 93.3 5e-14 seq153 93.3 5e-14 seq1741 89.7 6e-13 seq2305 87.8 2e-12 seq493 87.8 2e-12 seq200 87.8 2e-12 seq1628 86.0 8e-12 >seq1827 Length=6380 Score = 113 bits (124), Expect = 6e-20 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | ||||||||||| ||||||||||||||| || || Sbjct 4365 GGTAACCCTTCATGNTGCACATGGCATGTGTATCTCAGCTCTTCTCCAGAAGGAACCACC 4306 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| ||||| || || ||||| || || || | || ||| | ||||| | Sbjct 4305 ACAGCTGCCCACTTTTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCTATG 4246 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 ||||| | || | || || || | | ||| || || | || ||||| || || || Sbjct 4245 TCTTGGGTGTGGTTTTTCCCATCCCTCTTCCAGGTCATNGTGATGTCAGCTGGGTAGAAG 4186 Query 14352 CCCAAAGCCCAGCACC 14367 |||| |||||||||| Sbjct 4185 CCCAGGGCCCAGCACC 4170 >seq734 Length=66339 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | |||||||||||| ||||||||||||||| || || Sbjct 1968 GGTAACCCTTCATGGTGCACATGACATGTGTATCTCAGCTCTTCTCCAGAAGGAACCACC 2027 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || ||||| || || || | || ||| | |||| | Sbjct 2028 ACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCCATT 2087 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 ||||| | |||| | || || | | ||| || || | || ||||| || || || Sbjct 2088 TCTTGGGTGTGATTATTCCCATCCCTCTTCCAGGTCATGGTGATGTCAGCTGGGTAGAAG 2147 Query 14352 CCCAAAGCCCAGCACC 14367 |||| ||||||||||| Sbjct 2148 CCCAGAGCCCAGCACC 2163 >seq1572 Length=41812 Score = 105 bits (116), Expect = 8e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | |||||||||||| ||||||||||||||| || || Sbjct 14527 GGTAACCCTTCATGGTGCACATGACATGTGTATCTCAGCTCTTCTCCAGAAGGAACCACC 14586 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || ||||| || || || | || ||| | |||| | Sbjct 14587 ACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTTTCTGGCAGCTCCATT 14646 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 ||||| | |||| | || || | | ||| || || | || ||||| || || || Sbjct 14647 TCTTGGGTGTGATTGTTCCCATCCCTCTTCCAAGTCATGGTGATGTCAGCTGGGTAGAAG 14706 Query 14352 CCCAAAGCCCAGCACC 14367 |||| |||||||||| Sbjct 14707 CCCAGGGCCCAGCACC 14722 >seq1257 Length=35899 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 14181 TCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACC 14240 ||||| || || | ||||||||||| ||||||||||||||| || || | ||||||| Sbjct 23109 TCATGGTGCACATGGCATGTGTATCTTAGCTCTTCTCCAGAAGGAACCACCACAGCTACC 23050 Query 14241 CATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTT 14300 || ||||| || || ||||| || || || | || ||| ||||| | || || | Sbjct 23049 CACTTTTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGAAGCTCTATGTCCTGGGTG 22990 Query 14301 TGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCC 14360 || | || || || | | ||| || || | || ||||| || || || |||| ||| Sbjct 22989 TGGTTTTTCCCATCCCTCTTCCAGGTCATGGTGATGTCAGCTGGGTAGAAGCCCAGGGCC 22930 Query 14361 CAGCACC 14367 ||||||| Sbjct 22929 CAGCACC 22923 >seq22 Length=59539374 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 ||||||||||| || | ||||||||||| ||| ||||||||||| || || | |||| Sbjct 3941059 CCTTCATGTTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCT 3941118 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| || || || | || || | |||| || || || Sbjct 3941119 GCCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCACAAGCTCCGTGTCCTGG 3941178 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| ||||| || | | ||| || | | || ||||| || || ||||||| Sbjct 3941179 GACAGATCCTCTCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAACCCAGG 3941238 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 3941239 GCCCAGCACC 3941248 >seq1296 Length=40675 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| ||||||| || || | ||||||||||| ||||||||||||||| || || Sbjct 29370 GGTAACCCTTCATCGTGCACATGGCATGTGTATCTTAGCTCTTCTCCAGAAGGAACCACC 29311 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | ||||||||| ||||| || || ||||| || | || | || ||| | ||||| | Sbjct 29310 ACAGCTACCCACTTTTGGAAGGTTCCATCCCCTGAAGGCCTGGTGTCTGGCAGCTCTATG 29251 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || | || | || || || | | ||| || || | || ||||| || || || Sbjct 29250 TCCTGGGTGTGGTTTTTCCCATCCCTCTTCCAGGTCATGGTGATGTCAGCTGGGTAGAAT 29191 Query 14352 CCCAAAGCCCAGCACC 14367 ||| |||||| ||| Sbjct 29190 ACCAGGGCCCAGTACC 29175 >seq879 Length=29102 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | ||||||||||| ||||||||||||||| || || Sbjct 26809 GGTAACCCTTCATGGTGCACATGGCATGTGTATCTCAGCTCTTCTCCAGAAGGAACCACC 26868 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || ||||| || || || | || ||| | ||||| | Sbjct 26869 ACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCTATG 26928 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || | || | || || || | ||| || | | || ||||| || || || Sbjct 26929 TCCTGGGTGTGGTTTTTCCCATCCATCTTCCAGGTCAGGGTGATGTCAGCTGGGTAGAAG 26988 Query 14352 CCCAAAGCCCAGCACC 14367 |||| |||||||||| Sbjct 26989 CCCAGGGCCCAGCACC 27004 >seq153 Length=34384 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | |||||||||| ||||||||||||||| || || Sbjct 15082 GGTAACCCTTCATGATGCACATGGTATGTGTATCTCAGCTCTTCTCCAGAAGGAACCACC 15141 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 |||||| |||| || || || | |||| | || || | || ||| | ||||| | Sbjct 15142 ATAGCTTCCCACTTCTGGAAGTTTCCATGACATGCAGGCCTGGTGTCTGGCAGCTCTATG 15201 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || | || | || || |||| | ||| || || | || ||||| || || || Sbjct 15202 TCCTGGGTGTGGTTTTTCCCATCTCTCTTCCAGGTCATGGTAATGTCAGCTGGGTAGAAG 15261 Query 14352 CCCAAAGCCCAGCACC 14367 |||| |||||||||| Sbjct 15262 CCCAGGGCCCAGCACC 15277 >seq1741 Length=66902 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 |||| || ||||| || || | ||||||||||| ||| ||||||||||| || || Sbjct 54949 GGTAGCCCCTCATGGTGCACATAGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACC 55008 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || |||||||| || | || | || || | |||| | Sbjct 55009 ACAGCTGCCCACTTCTGGAATGTCCCATCCCCTGAAGGCCTCGTCTCCACAAGCTCCATG 55068 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || | | || |||||||| | | ||| || | | |||||||| || || || Sbjct 55069 TCCTGGGTCAGGTCCTCTCCGTCCCTCTGCCAGGTCAGGATGATATCAGCAGGGTAGAAG 55128 Query 14352 CCCAAAGCCCAGCA 14365 ||||| |||||||| Sbjct 55129 CCCAAGGCCCAGCA 55142 >seq2305 Length=50914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | |||||||||||| ||||||||||| ||| || || Sbjct 42063 GGTAACCCTTCATGATGCACATGACATGTGTATCTCAGCTCTTCTCCAGGAGGAACTACC 42004 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || ||||| || || || | || ||| |||| | Sbjct 42003 ACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGTAGCTCCATG 41944 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 |||| | | || | || || || | | ||| || | | | ||||| || || || Sbjct 41943 TCTTCAGTGTGGTTTTTCCCATCCCTCTTCCAGGTCAGGGTGAGGTCAGCTGGGTAGAAG 41884 Query 14352 CCCAAAGCCCAGCACC 14367 |||| |||||||||| Sbjct 41883 CCCAGGGCCCAGCACC 41868 >seq493 Length=4840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || | |||||||||||| ||||||||||||||| || || Sbjct 3284 GGTAACCCTTCATGGCACACTTGACATGTGTATCTCAGCTCTTCTCCAGAAGGAACCACC 3343 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| | || || || ||||| || || || | || ||| | |||| | Sbjct 3344 ACAGCTGCCCACATCTGTAAGGTTCCATCCCCTGCAGGTCTGGTGTCTGGCAGCTCCATG 3403 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || | || | || || || | ||| || | | |||||||| || ||||| Sbjct 3404 TCCTGGGTGTGGTTTTTCCCATCCATTTTCCAGGTCAGGGTGATATCAGCTGGGTAAAAG 3463 Query 14352 CCCAAAGCCCAGCACC 14367 |||| |||||||||| Sbjct 3464 CCCAGGGCCCAGCACC 3479 >seq200 Length=57959 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| ||||| | |||||||||||| |||||||||||||| || || Sbjct 37222 GGTAACCCTTCATGGTGAACTTGACATGTGTATCTCTGCTCTTCTCCAGAAGTAACCACC 37163 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | | | |||| || || || || ||||| || || || | || ||| | |||| || Sbjct 37162 ACTGATGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCCGTG 37103 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || | || | || || || | | ||| || | | || ||||| || || || Sbjct 37102 TCCTGGGTGTGGTTTTTCCCATCCCTCTTCCAGGTCACGGTGATGTCAGCTGGGTAGAAG 37043 Query 14352 CCCAAAGCCCAGCACC 14367 |||| || ||||||| Sbjct 37042 CCCAGGGCTCAGCACC 37027 >seq1628 Length=36381 Score = 86.0 bits (94), Expect = 8e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || | | || |||||||| || |||||||||||| | || Sbjct 22248 GGTAACCCTTCATGGTGCCCATGGCAGGTGTATCTCAGCTGTTCTCCAGAAGGAAATACC 22189 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| |||| || || ||||| || || || | || ||| | ||||| | Sbjct 22188 ACAGCTGCCCACTTTTTGAAGGTTCCATCCCCTGCAGGTCTGGTGTCTGGCAGCTCTATG 22129 Query 14292 TCTTGACTTTGATCTTCT-CCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAA 14350 || || | || | || | || || | | ||| || || | || ||||| || || || Sbjct 22128 TCCTGGGTGTGTTTTTTTCCCATCCCTCTTCCAGGTCATGGTGATGTCAGCTGGGTAGAA 22069 Query 14351 ACCCAAAGCCCAGCACC 14367 ||||| |||||||||| Sbjct 22068 TCCCAAGGCCCAGCACC 22052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629262897750760