Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1997 129 7e-25 seq9 125 8e-24 seq10 89.7 6e-13 >seq1997 Length=85722 Score = 129 bits (142), Expect = 7e-25 Identities = 310/462 (67%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTA-CTTATCAATTCATTAGAAAAGGTTAATCC 37237 ||||| || || |||||||| || ||||| || || | ||||| ||||| || | || Sbjct 33662 GCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAAAATGTAAGGCC 33721 Query 37238 TGGCATTAAACCTCtttttttAATCCAAAAT-ATTGCTGCAAAAGATCCAGAAAAGAAAA 37296 |||||| | || | || || | ||| | | || | ||||||||| ||||||||||| | Sbjct 33722 TGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACCAGAAAAGAAGA 33781 Query 37297 TACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTG--AACTATAAT---C 37351 | | ||| || ||||| | |||| | | || || || || | | | | Sbjct 33782 TTCTTTCCACCATGGCAAAGACCACAACTCATTCTCC-AATGTCCCCAATTCTCCTTGTC 33840 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 |||||| | ||| || ||||| || ||||| ||||||| ||| || Sbjct 33841 CCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATAGC 33900 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 || |||||| | | | |||| | |||| | || ||||| || || || | ||| || Sbjct 33901 ATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAAGGAGACTGTA 33960 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 ||||||||||| | || || || || || || || ||||| ||||| | || || | Sbjct 33961 CATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGT 34020 Query 37532 TAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 | |||||| || | ||| | || | ||||||||||| ||||| ||| |||| Sbjct 34021 AACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCACCACTCAT 34080 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||| ||||| ||||| | ||||| |||||| ||||| Sbjct 34081 TGCAAA-AAAGCCAGAACGTGAGATATAAGATGTCTCTCATC 34121 >seq9 Length=107150856 Score = 125 bits (138), Expect = 8e-24 Identities = 169/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 37398 ATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCA 37457 ||||||||||| || || |||||| | | | |||||| ||| | || ||||| ||| Sbjct 26404755 ATTGTTTCAATAGCATTGAAGAGATACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCA 26404814 Query 37458 ATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAA 37517 || || | ||| || ||||||||||| || ||||| || || || || || ||||| ||| Sbjct 26404815 ATAAGGAGACTGTATATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 26404874 Query 37518 CACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACT 37577 || | | || | | |||||| || | || | || | ||||||||| | ||| Sbjct 26404875 CAGCGGGTCTCTGTAACTTGAACTTCTTGGCTGAATCGCT---CCAAGTTTTCACTGACT 26404931 Query 37578 ATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT 37632 || ||||||| ||||||||||||| ||||| | ||||||||||| |||| Sbjct 26404932 ATGCCATCACACACTGCAAAGAAAGCCAGAACGTGAGCAATAAAATGTCTCTCAT 26404986 >seq10 Length=113323912 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | ||||| ||||| || | || ||||| | || | ||| || Sbjct 23466443 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTG 23466384 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| || || ||||| || Sbjct 23466383 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCC 23466324 Query 37320 ACAA 37323 |||| Sbjct 23466323 ACAA 23466320 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||| || || ||||| | || || || || ||||| ||||| Sbjct 23467799 CATGACTCCCATCCTCTGATACTCCCCTACTCGCTTCTCAAAGAAGTTCGTCTTCCCTTC 23467740 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||| ||||||||||| || ||||||||||| Sbjct 23467739 GAGTGAGATATTTTCCATGAAGTCAAATGGATT 23467707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592297690379240