Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2 120 2e-22 >seq2 Length=163939365 Score = 120 bits (132), Expect = 2e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || |||| || || |||||||| ||||| |||| |||||||| ||||| ||||| Sbjct 24269899 TAGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGG 24269958 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 || || || ||||| || || ||||||||||| ||||| || || ||||| || | Sbjct 24269959 CACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCAC 24270018 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 ||| || ||||| || | || ||||| ||||| || ||||| ||| Sbjct 24270019 CACATAGAACTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 24270064 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || ||||||||||||| ||||||||||| ||||| || || || || |||||||| Sbjct 24274803 CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTC 24274862 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || | | | || ||| |||||| |||||||| ||| || ||||| || Sbjct 24274863 CCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGACCCATTGGCATC 24274922 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| | || ||||| ||| | ||||| | |||||||| || Sbjct 24274923 CCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCC 24274970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408604746550313