Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4 145 6e-30 seq1 125 6e-24 seq9 95.1 1e-14 seq17 84.2 2e-11 >seq4 Length=164141553 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || ||||| || | | ||| | | |||| Sbjct 18056558 AACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATCT 18056617 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||||| ||||| ||||| | ||| ||||| || ||||| ||||| ||||| Sbjct 18056618 TCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 18056677 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| |||||| || | ||| || || || |||| ||| Sbjct 18056678 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTT 18056737 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || || | || || ||||| |||||||| || Sbjct 18056738 TTTCCCGTAAGGGTCTTCACAAAAATCTGCATCGT 18056772 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || ||||| || | | ||| | | |||| Sbjct 99334571 AACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATCT 99334630 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||||| ||||| ||||| | ||| ||||| || ||||| ||||| ||||| Sbjct 99334631 TCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 99334690 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| |||||| || | ||| || || || |||| ||| Sbjct 99334691 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTT 99334750 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || || | || || ||||| |||||||| || Sbjct 99334751 TTTCCCGTAAGGGTCTTCACAAAAATCTGCATCGT 99334785 Score = 109 bits (120), Expect = 4e-19 Identities = 149/207 (72%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||| |||| || |||| || ||||| || | | ||| | | |||| |||| ||| Sbjct 31007729 TGAAGGATAGACTCCGTTTGAATGTTGTAGTCAGACAAAGTACAGCCATCTTCCAGCTGC 31007788 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| | ||| ||||| || ||| ||||| |||| || || || Sbjct 31007789 TTACCAGCAAAGATCAACCTCTGCTGATCAGGAAGAAGTCCTTCATTATTCTGGATCTTG 31007848 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| |||||| |||||| || | ||| | || || |||| ||||| | | Sbjct 31007849 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAACTCGAGTGTGATGGTTTTTCTCCAT 31007908 Query 101447 AAAGTTTTT-ACAAATATCTGCATGGT 101472 || | | || |||||||||||||| || Sbjct 31007909 AAGGGTCTTCACAAATATCTGCATCGT 31007935 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/170 (71%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || |||||| ||| | | |||| Sbjct 77711491 AACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAA--------AGTACGGCCATCT 77711440 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||||| || ||||| ||||| | ||| ||| | || ||||| |||| ||||| Sbjct 77711439 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGACCAGGAGGAATTCCTTTCTTATCC 77711380 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAG 101427 || || || |||| | |||||| |||||| || | ||| || || || Sbjct 77711379 TGGATCTTGGCCTTTATATTTTCTATAGTGTCTGAGGGTTCAACCTCGAG 77711330 >seq1 Length=172151128 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||||||||| || ||||| || ||||| | | ||| | | |||| |||| || Sbjct 144045289 ATGAAGGGTAGACTCCTTTTGAATGTTGTAGAAAGACAAAGTACGGCCATCTTCCAGCTG 144045348 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| ||||| | ||| | ||| || ||||| ||||| ||||| || || || Sbjct 144045349 CTTACCCGCAAAGATCAATCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 144045408 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||| |||||| |||||| || | ||| || | || ||| ||||| || || Sbjct 144045409 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCTTGATGGTTTTTCCCGT 144045468 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| |||||||| Sbjct 144045469 AAAGGTCTTCACAAAAATCTGCAT 144045492 >seq9 Length=107150856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| ||||| || | | ||| | | |||| Sbjct 72218621 AACACAAGATGAAGGGTAGACTCCTTTTGAGGGTTGTAGTCAGACAAAGTACAGCCATCT 72218680 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||||| || ||||| ||||| | ||| ||||| || |||| ||||| ||||| Sbjct 72218681 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCAGGAGGAAGTCCTTCCTTATCC 72218740 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGA 101412 || || || |||||| |||||| |||||| || Sbjct 72218741 TGGATCTTGGCCTTTACATTTTCTATAGTGTCTGA 72218775 >seq17 Length=88915856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || ||||| || | |||||||| | | || | | |||| |||| || || || Sbjct 64220013 GGTGGACTCTTTCTGGGTGTTGTAATCAGACAGGGTGCAGCCATCCTCCAGCTGTTTGCC 64220072 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 |||||||||| | ||| || || || || | |||||| || ||||| || || || Sbjct 64220073 GGCAAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCCTTGTCTTGGATCTTGGCCTT 64220132 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| | || | || ||| | || ||||||||||||| || ||||| | | || Sbjct 64220133 GACATTCTCGATGGTATCACTGGGCTCTACTTCAAGAGTGATGGTCTTGCCCATCAGGGT 64220192 Query 101452 TTTTACAAATATCTGCATG 101470 || ||||| ||||||||| Sbjct 64220193 CTTCACAAAGATCTGCATG 64220211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396265934691417