Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 105 5e-18 seq1 89.7 4e-13 >seq4 Length=164141553 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || | |||||| | ||| || || ||| ||||| || ||||| || || Sbjct 18056543 CCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAC 18056602 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || |||| ||||||||| ||||| |||| | ||| ||||| | ||| Sbjct 18056603 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 18056662 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| |||||| | | || || || | || ||| Sbjct 18056663 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 18056722 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || | ||| || ||||||||||| | || || |||||||||||||||||| Sbjct 18056723 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCATCGTG 18056773 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || | |||||| | ||| || || ||| ||||| || ||||| || || Sbjct 99334556 CCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAC 99334615 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || |||| ||||||||| ||||| |||| | ||| ||||| | ||| Sbjct 99334616 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 99334675 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| |||||| | | || || || | || ||| Sbjct 99334676 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 99334735 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || | ||| || ||||||||||| | || || |||||||||||||||||| Sbjct 99334736 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCATCGTG 99334786 >seq1 Length=172151128 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||| | | ||| || || ||| |||||||| ||||| ||| | | | || | || Sbjct 144045280 CAACCCAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGAAAGACAAAGTACGGCCATC 144045339 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||||||| ||||| |||| || ||| | ||| | |||| || ||||| || Sbjct 144045340 TTCCAGCTGCTTACCCGCAAAGATCAATCTCTGCTCATCAGGAGGAATTCCTTCCTTATC 144045399 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | || || || | || |||| | | | || || Sbjct 144045400 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCTTGATGGT 144045459 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||||||| || || || ||||||||||||||| || Sbjct 144045460 TTTTCCCGTAAAGGTCTTCACAAAAATCTGCATCATG 144045496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380925617250663