Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq24 167 4e-36 seq23 145 1e-29 seq27 100 5e-16 seq1 96.9 6e-15 seq9 89.7 1e-12 >seq24 Length=52117086 Score = 167 bits (184), Expect = 4e-36 Identities = 182/240 (76%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 241390 CTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCC 241447 ||| ||||| | || ||||| | || ||||| ||| ||||| || ||||| || ||| Sbjct 9456718 CTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGCTTGAGCTGCGCCACTTGCTCC 9456775 Query 241448 CGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTC 241507 || || | | || | | | ||||| || ||||| |||| |||||| |||||| || Sbjct 9456776 CGTAGGAGGCCGGCAGCACTCGACAGCCCGGCGTTCTCAGCCTTGAGTGTCTTCACCTTG 9456835 Query 241508 TCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGG 241567 |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| | | Sbjct 9456836 TCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCCTG 9456895 Query 241568 TTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| |||| ||| || ||| | |||||||| |||||||| ||||||| ||| || ||| Sbjct 9456896 TTCCGCAGTCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGGAC 9456955 >seq23 Length=89631738 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 85367397 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 85367338 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 ||| ||| | ||||| ||| |||||||| ||||| |||| ||| || ||||| Sbjct 85367337 TCTGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCTTCCAGGCGCGAGATACGCTCCAGC 85367278 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| ||||||||||| ||| || | |||||| || || ||||| || ||||||||| Sbjct 85367277 TTGCGCTTGCGGCATTTGGAGGCGGCGATGCGGTTGCGCAGCCTCTTGCGCTCCGCCTTG 85367218 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||||| || ||||||||||| || ||| Sbjct 85367217 ATGCGTTCTTGCGTGTCCATGTCGATGGGCGAC 85367185 >seq27 Length=41896614 Score = 100 bits (110), Expect = 5e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC--- 241471 ||||| | ||||||||| || ||||| || || ||||| | | ||||| |||| Sbjct 36638217 AGGACTTACTGTTTGAGCTGAGCCACTTGCTCGCGCAGCAGGCTGGCGGT---GGACTAA 36638161 Query 241472 AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCC 241531 || | ||| | ||||| ||| |||||||||||||| |||| ||| || ||| Sbjct 36638160 AGCACGATGTTCTGGTTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATACGCTCC 36638101 Query 241532 AGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCC 241591 || ||||| ||||||||||| ||| | | | || | || ||||| || |||||| Sbjct 36638100 AGCATGCGCTTGCGGCATTTGGAGGCGG--AGATGTTTGCACAGCCTCTTGCGCTCCGCC 36638043 Query 241592 TTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||||||||| | ||||||| ||| || ||| Sbjct 36638042 TTGATGCGTTCCCGCGTGTCCATGTGGATGGGCGAC 36638007 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || ||||| || || ||||| | | ||||| ||| Sbjct 36067557 AGGACTTACTGTTTGAGCTGAGCCACTTGCTCGCGCAGCAGGCTGGCGGTGAACTCCAGC 36067498 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| ||| |||||||||||||| |||| ||| | ||||| Sbjct 36067497 ACGGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATATGCTCCAGC 36067438 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 ||||| ||||||||||| ||| | | | || | || ||||| || ||||||| | Sbjct 36067437 ATGCGCTTGCGGCATTTGGAGGCGG--AGATGTTTGCACAGCCTCTTGCGCTCCGCCTAG 36067380 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||| | ||||||| ||| || ||| Sbjct 36067379 ATGCGATCCCGCGTGTCCATGTGGATGGGCGAC 36067347 >seq1 Length=172151128 Score = 96.9 bits (106), Expect = 6e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | || || || ||||||||||||||| |||||| ||||||||||| ||| Sbjct 73310443 GTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGG 73310384 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| ||| ||||| |||||||||||||| |||| || ||||| |||| Sbjct 73310383 TTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCCGTCTCCGTCTGG 73310324 Query 213648 GAC 213650 ||| Sbjct 73310323 GAC 73310321 >seq9 Length=107150856 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||| ||||| ||||| || ||||| || | ||||| |||| ||| Sbjct 46481883 TTCACTTTTTCCTCTAGCCGAGCGATCCGCTCCAGCTTCCTTTTCCGGCACTTGGAGGCG 46481942 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || ||||| |||||||||| Sbjct 46481943 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGAGACTCCATGTCG 46482002 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 46482003 ATGGGGGAC 46482011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931502746423040