Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq15 143 3e-29 seq2 84.2 3e-11 >seq15 Length=89017189 Score = 143 bits (158), Expect = 3e-29 Identities = 217/309 (70%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 153702 AGTTGAAGTGGTAACACAGGATGTAAATTCATCACTTCGATCGCCCGCGTCCCTCAGATG 153761 ||| |||||||| || ||||||| || |||| | | | || ||| | |||| Sbjct 40022369 AGTGGAAGTGGTGACCCAGGATGAAAGAAAGGCACTGCACACAACTGCATCCTTACGATG 40022310 Query 153762 CTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAGG 153821 || ||||||| | || ||||| || ||||| || ||||| || |||||||||||| | Sbjct 40022309 TTCTCTGAAAACATCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAG 40022250 Query 153822 TCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATAA 153881 |||||||| |||| ||| || |||||| |||| || || || | ||||| | || || Sbjct 40022249 CCCAGAAAACATGGTCACCTACAGCAAAACCCATGGGGTTGTAATCCAGCCTGCCTACAA 40022190 Query 153882 AGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATGC 153941 ||| || || || | || || | || || | ||| || || || || ||||| | Sbjct 40022189 AGACAGGATAAACGTCACTGAGCTGGGACTCTGGAACTCCAGCATCACCTTCTGGAACAC 40022130 Query 153942 AACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGGT 154001 ||| |||| ||||| || || || |||||||| || || | ||| |||||| || || Sbjct 40022129 AACGTTGGAAGATGAGGGTTGCTACATGTGTCTCTTCAACACGTTTGGTTCTCAGAAAGT 40022070 Query 154002 ATCGGGAAC 154010 || ||||| Sbjct 40022069 CTCAGGAAC 40022061 >seq2 Length=163939365 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 2656 AGAATTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGAGAAT 2715 |||||||| ||| |||||||| || | ||| ||||||||||||||| | |||||||| | Sbjct 143875122 AGAATTTCCTAATGAGATACAAGGGGACTTTTGATTACTGGATCGGCCTGCACAGAGAGT 143875063 Query 2716 CATCAGAACATCCGTGGAAATGGGCGGATAATAC 2749 | ||||| || || ||||| ||| | || || || Sbjct 143875062 CGTCAGAGCACCCTTGGAAGTGGACAGACAACAC 143875029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649278251984560