Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1 268 1e-66 seq26 120 4e-22 seq15 109 6e-19 >seq1 Length=172151128 Score = 268 bits (296), Expect = 1e-66 Identities = 658/989 (67%), Gaps = 19/989 (2%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || ||| || || ||| || ||||| || Sbjct 129345089 CAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCGACATCCATGTCAAACTTATTGGC 129345148 Query 160112 GAACA---GATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCA 160168 || | |||| || ||| || |||||| || ||| || | ||||| ||||| Sbjct 129345149 AAAAAAGTGATGTTG-GCGC-----AGCATCCAGCTCAAGTCACCAGCTCCGAAGACGCA 129345202 Query 160169 GACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACC 160228 || || || | ||| || || ||| || || || | || || || | || || || Sbjct 129345203 CACAGAGCGCACGTGGACTCCACCGCACGGTGGATAAGGGGCACCGTTGGAAACATCGCC 129345262 Query 160229 TTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTT 160288 ||| ||||||||||||| |||||||| || || || | |||||| || ||| || || Sbjct 129345263 TTCAAAGTACTGCCACTTGACAAACCTAGCAATGGCATTCATGTCAGACAAGTCATACTT 129345322 Query 160289 GTA-CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGT 160347 | | | ||||||| | ||| || || |||| || | || | ||||||||| | | Sbjct 129345323 ATGGCTTGAGGGGAAAGA-ACCAGGGACTTCGGGGATCCTTTGGATGGTGGCCCATAAGA 129345381 Query 160348 GTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCC 160407 || || |||||||| ||||||| | |||||||||||||| | || || | Sbjct 129345382 ACTCATCTGGGCTGTAGGTGTCCTGTGCCCATTCCATGAACTTTTGAATATTTCTATTTT 129345441 Query 160408 GCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCG 160467 ||| || | || || || | || || ||||| || ||||| || || | | Sbjct 129345442 CCAGCACATAGCCTACATATTCCCTACTGACCACGAAGTAGGCACTGCCTGAAAAGAGAG 129345501 Query 160468 G---TATGGGTATAGGCGGCGTGT-CTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 | | || || || ||| ||| ||||| | || ||||| | || | || | Sbjct 129345502 GAGTTTTGAGT---GGGGGC-TGTGCTTTGATCACTCCAGTGTTGGTCAGCTTCCCATCG 129345557 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 || | || | || || ||||| || | ||||| || ||||| || || || Sbjct 129345558 ACAATGGCATATCTTTTTTTCCATCTCTCTTCCTTGTTGGGAGGCATTTTCTCAGTTTCC 129345617 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 || |||| | || || |||| |||| | |||| || || || || || || | Sbjct 129345618 AGGTTGTTTTCCCCTATGAAGCATTTGAGCTTCCTGACAATTTCCAGATTGGTTTTAATA 129345677 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 || || || |||| || | || |||| ||||||||| || || ||| || |||| Sbjct 129345678 GGGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTGCATTCATTCTGTACAGG 129345737 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 ||| ||||||| || | || |||| || || |||||||| || || || || |||| Sbjct 129345738 TCCTTCATGCAGTTGAGGTCAGCCTTAACCCGACTCCAGGATGCATAAACAACACTCTCC 129345797 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||||||||||||| ||||| || || || |||| ||| |||||| || Sbjct 129345798 AACTGGCTGGCCACAAAGACATTATCAAAGCAGGATGCGATGCCCTGCACCGCGGCTAAA 129345857 Query 160824 AACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883 || | || || |||| ||||||||| | ||| || | ||||||||| | |||||| Sbjct 129345858 AAGGATTCCTCTGCTTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGCACATAGATG 129345917 Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943 ||||| || | ||| || | ||| || || |||||||| | |||||| || || || || Sbjct 129345918 GCCCTCAGGAGCCTGTCAAGCATTTCAATTTTATGATGAACCACGATGGAATATGCAATT 129345977 Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003 ||||| | ||| || | | |||| | | | || || || ||| |||||||| Sbjct 129345978 GGAAAGCCTACCTCTTCTTTAGTAAGGGGCTCCACAATATATTTGCGTGTCCTGATAAAA 129346037 Query 161004 TAATCACAATCCCGCGTCATGTTGATATA 161032 | ||||||| || |||||||| ||||| Sbjct 129346038 GAGGCACAATCACGGGTCATGTTTATATA 129346066 >seq26 Length=50160631 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| ||| |||| || |||| | |||||| ||||| || |||| | | | Sbjct 32814408 AGATATTTTGCTAACTCACTGGGAGAGTTAAAATCATCCACATGAATGAATGAATCAGCT 32814467 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || ||||| | || | ||||| | || || Sbjct 32814468 GGAATATAATTCTCATAGTTTTCCCTAGACGGTCCCAGGACAACAGGTACTGAACCAGCC 32814527 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || |||| ||||| |||||||| |||||| || ||||||||||||||||||||| Sbjct 32814528 AAAAATGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGAATTGAGTTTTCAAAAGAA 32814587 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 32814588 AGATAAAATTTACA 32814601 >seq15 Length=89017189 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 168186 GATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAA 168245 || || |||||||||||||| |||||| |||| || || || |||| || || ||||| Sbjct 40022079 GAACCAAACGTGTTGAAGAGACACATGTAGCAACCCTCATCTTCCAACGTTGTGTTCCAG 40022138 Query 168246 AATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCACACGATCTTTATAAGGA 168305 || || | | ||||| | ||| |||| || || | ||| | | ||||| || | | Sbjct 40022139 AAGGTGATGCTGGAGTTCCAGAGTCCCAGCTCAGTGACGTTTATCCTGTCTTTGTAGGCA 40022198 Query 168306 GGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCC 168365 || || | |||||| || ||| | | |||| ||||| ||||||| || ||||| || Sbjct 40022199 GGCTGGATTACAACCCCATGGGTTTTGCTGTAGGTGACCATGTTTTCTGGGCTTACAGCT 40022258 Query 168366 TTTATCTTCTGCCAGGTTACTATCA 168390 || | |||||||| || || |||| Sbjct 40022259 TTCTTTTTCTGCCATGTCACAATCA 40022283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577200577465560