Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq10 86.0 7e-12 >seq1 Length=172151128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||||||||| || || ||||| ||||| ||||| ||| | |||||| |||||| Sbjct 73310322 TCCCAGACGGAGACGGGTACCCCATACATGCTCTACAAAGATTCCTGTAACCGGAAGAGC 73310381 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| |||| || ||||| || || || || || ||||| |||||||| Sbjct 73310382 AACCAGCAGAACCTGGGGACCATCAAATGCAGCAACCTGTGTACAGAAATAGTAGAGTAC 73310441 Query 76016 ACAGATAAGGATGAG 76030 || ||| |||||| Sbjct 73310442 ACCAGTAAAGATGAG 73310456 >seq10 Length=113323912 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 |||||||||||||| |||||||| || || || |||||||| ||||||||||||||| Sbjct 23467707 AATCCATTTGACTTCATGGAAAATATCTCACTCGAAGGGAAGACGAACTTCTTTGAGAAG 23467766 Query 65503 CGAGTTGGGGACTAT 65517 ||||| ||||| ||| Sbjct 23467767 CGAGTAGGGGAGTAT 23467781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550353173280