Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4 123 5e-23 seq16 102 2e-16 seq9 86.0 1e-11 >seq4 Length=164141553 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | || || | ||| | |||| ||| || ||| || || || || Sbjct 18056542 ACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGA 18056601 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| |||| || |||||||||||||| || ||||| |||||||| || Sbjct 18056602 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 18056661 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| ||||| || || | ||| || Sbjct 18056662 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 18056721 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || || | || || | ||| |||||||| Sbjct 18056722 CTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | || || | ||| | |||| ||| || ||| || || || || Sbjct 99334555 ACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGA 99334614 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| |||| || |||||||||||||| || ||||| |||||||| || Sbjct 99334615 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 99334674 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| ||||| || || | ||| || Sbjct 99334675 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 99334734 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || || | || || | ||| |||||||| Sbjct 99334735 CTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 Score = 87.8 bits (96), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| || || | |||| |||| || |||||||||||||| || ||| Sbjct 31007750 ATGTTGTAGTCAGACAAAGTACAGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTC 31007809 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || |||||||| | | |||||| |||| || || || |||||||| ||||| Sbjct 31007810 TGCTGATCAGGAAGAAGTCCTTCATTATTCTGGATCTTGGCCTTTACATTTTCTATAGTG 31007869 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTAC-CAGTTAATGTTTTAATAAATATCTG 192533 || || | ||| | || || || |||||||| | | | | || || | ||||||||| Sbjct 31007870 TCCGAGGGTTCAAACTCGAGTGTGATGGTTTTTCTCCATAAGGGTCTTCACAAATATCTG 31007929 Query 192534 CAT 192536 ||| Sbjct 31007930 CAT 31007932 >seq16 Length=96704406 Score = 102 bits (112), Expect = 2e-16 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| |||||| || | || ||||| || || | ||||| |||| ||||||||| Sbjct 4425986 GTAGACTCTTTTTGAATGCTGTAGTCAGAGAAAGTATGGTCATCTTCCAGCTGTTTACCA 4425927 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 |||||||| | ||||| |||||||| || |||| ||| ||||| || | || ||| Sbjct 4425926 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCTTTCCTTATCCTGGGTCTTGGCCTTT 4425867 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 ||||| || ||| || || ||||| || || || || |||||||| || || || || Sbjct 4425866 ACATT--TTCTAGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTTCCCCGTAAAGGTC 4425809 Query 192520 TTAATAAA 192527 || | ||| Sbjct 4425808 TTCACAAA 4425801 >seq9 Length=107150856 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 192340 GTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 |||| ||| ||| || || || || ||||| || || || ||| |||| || ||||| Sbjct 86261825 GTAGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTACGGCGATCTTCCAGCTGCTTACC 86261883 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 192458 ||||||||| || ||||| |||||||| | | |||||| ||||| | | || || Sbjct 86261884 AGCAAAGATCAACCTCTGCTGATCAGG-AGAAGTCCTTCCTTATCCTAGGTCTTGGACTT 86261942 Query 192459 TACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518 ||||||| ||||| || || | ||| | || || || |||| || || || | || Sbjct 86261943 TACATTATCTATAGTGTCCGAGGGTTCATCCTCGAGCGTGATGGCCTTCCCTGTAAGGGT 86262002 Query 192519 TTTAATAAATATCTGCAT 192536 || | ||| |||||||| Sbjct 86262003 CTTCACAAAAATCTGCAT 86262020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984447444169350