Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4 113 8e-20 seq16 98.7 2e-15 >seq4 Length=164141553 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | |||| ||| || || || Sbjct 18056533 TTTCTTAGCACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTT 18056592 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| || ||||||||||| || || ||||| || Sbjct 18056593 GTAGTCCGACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTG 18056652 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| |||||| || || Sbjct 18056653 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 18056712 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || || || |||||||| || || | || || | || |||||||| Sbjct 18056713 GGGTTCAACCTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | |||| ||| || || || Sbjct 99334546 TTTCTTAGCACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTT 99334605 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| || ||||||||||| || || ||||| || Sbjct 99334606 GTAGTCCGACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTG 99334665 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| |||||| || || Sbjct 99334666 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 99334725 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || || || |||||||| || || | || || | || |||||||| Sbjct 99334726 GGGTTCAACCTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 >seq16 Length=96704406 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAG--TAGCCTCTTTAGAAATA 171890 ||||||| || ||| | ||||| || || || ||||| ||| |||||| ||| Sbjct 4426027 TTTCATAGCACTACCACGAAGTCTCAACAC-AAGGCTAAAGGGTAGACTCTTTTTGAATG 4425969 Query 171891 TTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGT 171950 | || || || |||| | || || |||| |||||||||||||| || | ||||| Sbjct 4425968 CTGTAGTCAGAGAAAGTATGGTCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGC 4425909 Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010 || ||||| || |||| ||| ||||| || | || |||||||| || |||| || Sbjct 4425908 TGATCAGGAGGAATTCTTTCCTTATCCTGGGTCTTGGCCTTTACATT--TTCTAGTGTCC 4425851 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 || ||||| || || || || |||||||| || || || || || Sbjct 4425850 GAGGATTCAACCTCCAGTGTGATGGTTTTCCCCGTAAAGGTCTT 4425807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905106798049800