Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq20 170 2e-36 seq17 154 2e-31 seq6 125 9e-23 >seq20 Length=69342659 Score = 170 bits (188), Expect = 2e-36 Identities = 168/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 25036679 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 25036620 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| ||||||| |||| | Sbjct 25036619 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCGCCCGCGATGCGCTCGAAGA 25036560 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| |||||||||| |||||||| Sbjct 25036559 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 25036500 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 25036499 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 25036463 Score = 158 bits (174), Expect = 1e-32 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 27534168 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 27534227 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| | ||||||| || | | Sbjct 27534228 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCTCGCGATGCGCTCAAAGA 27534287 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 27534288 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 27534347 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 27534348 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 27534384 Score = 154 bits (170), Expect = 2e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 25349958 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 25349899 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| ||||||| |||| | Sbjct 25349898 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCCGCGATGCGCTCGAAGA 25349839 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 25349838 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGANGAGATGCCCGTGTCGGGGT 25349779 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||||||||| Sbjct 25349778 GCACTTGCTTCAGCACCTTGTA 25349757 Score = 154 bits (170), Expect = 2e-31 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | |||||||||||| ||||||||||| || | || Sbjct 27485553 GCTTGGCCAGCTCCCCGGGNAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 27485612 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| | ||||| |||| | Sbjct 27485613 TGGTCGAGCGCTTGTTGTANTGCGCCAGGCGGGACGCCTCGCCCGCAATGCGCTCGAAGA 27485672 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| |||||||||| |||||||| Sbjct 27485673 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 27485732 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 27485733 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 27485769 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 25099629 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 25099570 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 25099569 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCGCTCGCGATGCGCTCGAAGA 25099510 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 25099509 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 25099450 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||| ||||| Sbjct 25099449 GCACTTGCTTCAGCACTTTGTA 25099428 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 27610784 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 27610725 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| | ||||| |||| | Sbjct 27610724 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCCGCAATGCGCTCGAAGA 27610665 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| |||||||||| |||||||| Sbjct 27610664 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 27610605 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||||||||| Sbjct 27610604 GCACTTGCTTCAGCACCTTGTA 27610583 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 25029871 GCTTGGCCAGCTCTCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 25029930 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| ||||||| |||| | Sbjct 25029931 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCCGCGATGCGCTCGAAGA 25029990 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 25029991 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 25030050 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||||||||| Sbjct 25030051 GCACTTGCTTCAGCACCTTGTA 25030072 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 27666245 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 27666186 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| ||| |||||| | ||||||| |||| | Sbjct 27666185 TGGTCGAGCGCTTGTTGTAATGAGCCAGGCGGGACGCCTCGCTTGCGATGCGCTCGAAGA 27666126 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||| ||||||| ||| | |||| ||||||||| |||||||| Sbjct 27666125 TGTCGTTCACGAACGAATTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 27666066 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||||||||| Sbjct 27666065 GCACTTGCTTCAGCACCTTGTA 27666044 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 25065720 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 25065661 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| | | ||||| |||| | Sbjct 25065660 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGACGCCTCGCTCGCTATGCGCTCGAAGA 25065601 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||| ||| |||||||| Sbjct 25065600 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATACCCGTGTCGGGGT 25065541 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||||||||| Sbjct 25065540 GCACTTGCTTCAGCACCTTGTA 25065519 Score = 141 bits (156), Expect = 1e-27 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 27868159 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 27868218 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| ||| |||||| | | ||||| |||| | Sbjct 27868219 TGGTCGAGCGCTTGTTGTAATGAGCCAGGCGGGACGCCTCGCTCGCAATGCGCTCGAAGA 27868278 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| | ||||| |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 27868279 TGTCGGTCACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCTGGGT 27868338 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| |||||||| |||||| Sbjct 27868339 GCACTTGCTTCAGCACCTTATAGATG 27868364 >seq17 Length=88915856 Score = 154 bits (170), Expect = 2e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| | |||||| | || Sbjct 26966673 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 26966614 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| | ||||||| |||| | Sbjct 26966613 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTNGCGATGCGCTCGAAGA 26966554 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| ||| || | Sbjct 26966553 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGAT 26966494 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 26966493 GCACCTGCTTCAGCACCTTGTA 26966472 Score = 154 bits (170), Expect = 2e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| | |||||| | || Sbjct 26971706 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 26971765 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| | ||||||| |||| | Sbjct 26971766 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTNGCGATGCGCTCGAAGA 26971825 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| ||| || | Sbjct 26971826 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGAT 26971885 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 26971886 GCACCTGCTTCAGCACCTTGTA 26971907 >seq6 Length=146485248 Score = 125 bits (138), Expect = 9e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | || ||||| | ||||||||||| |||| || Sbjct 86419098 GCTTGGCCAGTTCTCCGGGCAGTAGGAGACGCACCGACGTCTGGATCTCCCGCGACGTGA 86419039 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| | |||||||| || |||||| | | ||||| || | | Sbjct 86419038 TTGTAGACCGCTTGTTGTAATGCGCCAGGCGAGAAGCCTCGTTTGCTATGCGCTCAAAGA 86418979 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 86418978 TGTCATTGACAAAAGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 86418919 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 86418918 GCACCTGCTTCAGCACCTTGTA 86418897 Score = 113 bits (124), Expect = 6e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| || ||| ||| | ||| |||||||| ||||||||||| || | ||| || Sbjct 86467703 GCCAACTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGGGATGTGATGGTC 86467644 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| | |||||||||||| ||||| ||||||| |||| ||||| Sbjct 86467643 GAGCGCTTGTTGTAATGCGCCAGACGGGAAGCCTCTCCTGCGATGCGCTCGAAGATGTCA 86467584 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || || || ||||||| ||| | ||| |||||||| ||| |||||||| Sbjct 86467583 TTCACGAAGGAATTCATGATTCCCATAGCCTTAGATGAGATGCCGGTGTCTGGGTGCACT 86467524 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 86467523 TGCTTCAGCACCTTGTA 86467507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106927391053177