Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq17 86.0 5e-12 >seq17 Length=88915856 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || ||||| || || | | ||||| ||||| || | ||| ||||| Sbjct 64220213 AACATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAAGTAGAGCCC 64220154 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | || || ||||| ||||| |||||| | || || Sbjct 64220153 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCCTCCCACCTGAC 64220094 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| || |||||||||||||||| | | || || | |||||| Sbjct 64220093 CAGCAGAGGCTGATATTTGCCGGCAAACAGCTGGAGGATGGCTGCACCCTGTCTGATTAC 64220034 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||| || ||||| || || |||||| ||||| | | ||||| || || Sbjct 64220033 AACACCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGGGGTGG 64219984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412828613680433