Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq9 141 6e-29 seq17 122 6e-23 seq13 118 7e-22 seq28 84.2 1e-11 >seq9 Length=107150856 Score = 141 bits (156), Expect = 6e-29 Identities = 162/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||| ||||| ||||| |||||||| ||| || | |||| Sbjct 83841070 CAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCATC 83841129 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || || |||||||| ||||| | |||||||| | || | || |||||||| Sbjct 83841130 CTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTC 83841189 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| |||||| |||| || ||| Sbjct 83841190 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 83841247 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||||| |||||||| || |||||||||||| Sbjct 83841248 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 83841283 Score = 132 bits (146), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||| ||||| ||||| |||||||| ||| || | |||| Sbjct 80898458 CAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCATC 80898517 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| || || ||||| || ||||| | |||||||| | || | || |||||||| Sbjct 80898518 CTCCACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTC 80898577 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| |||||| |||| || ||| Sbjct 80898578 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 80898635 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||||| |||||||| || |||||||||||| Sbjct 80898636 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 80898671 >seq17 Length=88915856 Score = 122 bits (134), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||| || | ||| |||||||| | |||| ||| ||||| |||| || || || Sbjct 64219984 CCACCCCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGAC 64220043 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||| |||| ||||| || || ||||| || ||||| | |||||||| | || Sbjct 64220044 AGGGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 64220103 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 64220104 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTATCACTGGGCTCTA 64220161 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| || |||||||| ||| | |||||||| ||||||||||||||| Sbjct 64220162 CTTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATG 64220211 >seq13 Length=116904986 Score = 118 bits (130), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||||| | |||| ||| ||||| ||||| |||| | | ||| |||| |||| Sbjct 35782744 CAGCACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTGCAACAGGGTGCGGCCATC 35782803 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| | || | ||| || ||||| | |||||||| | || | || |||||||| Sbjct 35782804 CTCCAGCTCTTTGCTGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTC 35782863 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| ||| || |||| || ||| Sbjct 35782864 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATG 35782921 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||||| |||||||| ||||||||||||||| Sbjct 35782922 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 35782957 >seq28 Length=148379591 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| || ||||| ||||| || || || ||| ||| |||| Sbjct 136136139 AGGACCAGGTGTAGGGTCGACTTTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCT 136136198 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||| | || || ||||| || | |||||||| | | | ||||| || || Sbjct 136136199 TCCAGCTGCCTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGTGAATGCCCTCTTTATCC 136136258 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | |||| ||| ||| | || | ||| |||| Sbjct 136136259 TGGATCTTGCCCTTCAC--ATTCTTGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGG 136136316 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| | ||||| ||||| Sbjct 136136317 TCTTGCCGGTCAGGGTCTTCATGAAGATTTGCAT 136136350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325682555027639