Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 >seq4 Length=164141553 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || | || || |||||||| || |||| || | Sbjct 18056769 ATGCAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 18056710 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | ||||| ||||| ||||| ||||| | || |||||| Sbjct 18056709 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 18056650 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| ||||| |||||||| || | | || || ||||||||||| Sbjct 18056649 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAAC 18056590 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793 || |||||||||||||| | || | ||||||||| | || || || ||| |||| Sbjct 18056589 ATCCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTTCGGGGTGGTGCTAAGAAAA 18056532 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || | || || |||||||| || |||| || | Sbjct 99334782 ATGCAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 99334723 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | ||||| ||||| ||||| ||||| | || |||||| Sbjct 99334722 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 99334663 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| ||||| |||||||| || | | || || ||||||||||| Sbjct 99334662 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAAC 99334603 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793 || |||||||||||||| | || | ||||||||| | || || || ||| |||| Sbjct 99334602 ATCCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTTCGGGGTGGTGCTAAGAAAA 99334545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864252956309