Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq17 118 8e-22 seq9 113 3e-20 seq1 95.1 9e-15 >seq17 Length=88915856 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||| || ||||||||||| || | ||||| ||||| || |||| ||||| | Sbjct 64219984 CCACCCCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGAC 64220043 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || |||||||| ||| |||||| || ||||| || || || Sbjct 64220044 AGGGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 64220103 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 | || || |||||||| | || |||||| | || | || ||| | |||||| Sbjct 64220104 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCTACT 64220163 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || ||||| | | ||| || ||||| |||||||| || Sbjct 64220164 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 64220213 >seq9 Length=107150856 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| || | ||||| ||||| || ||||| || |||| Sbjct 80898444 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 80898503 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||| | ||| || | |||||||| ||| |||||| || ||||| || || || Sbjct 80898504 AGGGTGTGGCCATCCTCCACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 80898563 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || |||||| | || | |||||| | || || Sbjct 80898564 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 80898623 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || ||||| || | ||| || || || |||||||| || Sbjct 80898624 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 80898673 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| || | ||||| ||||| || ||||| || |||| Sbjct 83841056 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 83841115 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||| | ||| || || |||||||| || |||||| || ||||| || || || Sbjct 83841116 AGGGTGTGGCCATCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 83841175 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || |||||| | || | |||||| | || || Sbjct 83841176 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 83841235 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || ||||| || | ||| || || || |||||||| || Sbjct 83841236 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 83841285 >seq1 Length=172151128 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 29579 CCAA-ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||| |||||| || || || ||||||||||| || | | || || ||| || Sbjct 144045284 CCAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGAAAGACAAAGTACGGCCATCTTCC 144045343 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || || || || ||| | |||||||| |||| ||| || ||||| || || || || || Sbjct 144045344 AGCTGCTTACCCGCAAAGATCAATCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCTGG 144045403 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || || ||| |||||| |||||| || |||| || | || | || ||||| Sbjct 144045404 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCTTGATGGTTTTT 144045463 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| || ||||| |||||||| Sbjct 144045464 CCCGTAAAGGTCTTCACAAAAATCTGCAT 144045492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385207082568921