Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 seq8 86.0 6e-12 >seq2 Length=163939365 Score = 93.3 bits (102), Expect = 4e-14 Identities = 199/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 || ||||||||||| |||| || || ||||| ||||||||||| | | | |||| Sbjct 159720987 TTCATGTATTATGTGAATGGTGTAGTATATGGATCATTTAACTGCATTCTCTATGACCAC 159720928 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123 || | | | | | |||||| || ||| | ||| || || || | || || Sbjct 159720927 GCCCATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCC-AGATGAGAAGTATTACTNATC 159720869 Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183 ||||| ||||| || | ||| |||||| | ||| | || ||| |||| ||| | ||||| Sbjct 159720868 CAGCATCTGGGGACCAACCTGTGATGGCCTTGATCGGATCGTTGAGCGCTGTAACCTGCC 159720809 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243 || | || ||||| || ||| | | ||||| |||||||| || |||| | | | | Sbjct 159720808 CGAAATGCATGTGGGTGATTGGATGCTGTTTGAGAACATGGGTGCATACACNNTTG-CTG 159720750 Query 21244 CT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 || |||| || || || || |||| | |||| | | ||||||| || ||| Sbjct 159720749 CTGCTTCTACTTTCAATGGGTTCCAGAGGCCAAACATCTACTATGTAATGTCA 159720697 >seq8 Length=167013402 Score = 86.0 bits (94), Expect = 6e-12 Identities = 198/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 || |||||||| || |||||||| || ||||| ||||||||||| | | | |||| Sbjct 142189898 TTCATGTATTAAGTGAATGATGGAGTATATGGATCATTTAACTGCATTCTTTATGACCAC 142189957 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123 || | | | | || |||||| || ||| | ||| || || || | || || Sbjct 142189958 GCCCATGTGAAGGCTCTGCTGCAGAAGAGACCCAAGCC-AGATGAGAAGAATTACTCATC 142190016 Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183 ||||| ||||| || | || ||||| | ||||| |||||| ||| ||| | ||||| Sbjct 142190017 CAGCATCTGGGGACCAACATGTAATGGCCTTGATTGGATTGTTGAGCACTGTAACCTGCC 142190076 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243 || | || ||||| || ||| | | ||||| |||||||| | |||| | | | | Sbjct 142190077 TGAAATGCATGTGGGTGATTGGATGCTGTTTGAGAACATGGGTGTATACAATGTTG-CTG 142190135 Query 21244 CT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 || |||| || || || || |||| | | || | | ||||||| || ||| Sbjct 142190136 CTGCTTCTACTTTCAATGGGTTCCAGAGGTCAAACATCTACTATGTAATGTCA 142190188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463530644860080