Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4 123 5e-23 seq1 111 3e-19 seq16 104 5e-17 seq6 100 6e-16 seq9 96.9 7e-15 seq15 95.1 2e-14 seq23 89.7 1e-12 seq17 89.7 1e-12 >seq4 Length=164141553 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| || || || || || || || || | | | | || ||||| || || Sbjct 18056567 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATCTTCCAGCTGC 18056626 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || || ||||| ||||| |||||||||||||| || ||||| Sbjct 18056627 TTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 18056686 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| || || | || || || || || || Sbjct 18056687 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTTCCCGTA 18056746 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 18056747 AGGGTCTTCACAAAAATCTGCAT 18056769 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| || || || || || || || || | | | | || ||||| || || Sbjct 99334580 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATCTTCCAGCTGC 99334639 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || || ||||| ||||| |||||||||||||| || ||||| Sbjct 99334640 TTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 99334699 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| || || | || || || || || || Sbjct 99334700 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTTCCCGTA 99334759 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 99334760 AGGGTCTTCACAAAAATCTGCAT 99334782 Score = 100 bits (110), Expect = 6e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || |||||||| || || |||||||| || | | || ||||| || || || |||||| Sbjct 104846262 GACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCCAGCTGCTTGCCAGCA 104846203 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| | ||||| || || || || || || || ||||| || ||||| ||||| || Sbjct 104846202 AAGATGAACCTTTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCTTTCACG 104846143 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 || || || || ||| | || || || || | ||| || || ||| |||| ||||| Sbjct 104846142 TTCTCGATGGTGTCACTGGGCTCCACCTCTAGAGTGATGGTTTTGTTGGTCAGGGTCTTC 104846083 Query 82797 ACAAATATCTGCATT 82811 || || |||||| Sbjct 104846082 TTGAAGATTTGCATT 104846068 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 82609 GCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTT 82668 ||||||| || || || || || ||| | ||||| | | | || |||| || || | Sbjct 23451940 GCAGAGTGGACTCCTTTTGAATGTTACAGTCAGACAAAGTATGGCCATCTTTCAGCTGCT 23451999 Query 82669 TTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTG 82728 | ||||||||||| || || || ||||| | ||| |||||||||||||| || ||||| Sbjct 23452000 TGCCAGCAAAGATCAGCCTCTGCTGATCAGAAGGAATTCCTTCCTTATCCTGGATCTTGA 23452059 Query 82729 CTTTTACATTTTCAATCGTATC 82750 | ||||||||||| || || || Sbjct 23452060 CCTTTACATTTTCTATAGTGTC 23452081 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| || |||| || | || || || || ||||| | | | | || ||||| || || Sbjct 31007728 GTGAAGGATAGACTCCGTTTGAATGTTGTAGTCAGACAAAGTACAGCCATCTTCCAGCTG 31007787 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| | || || ||||| ||| | | |||||| |||| || ||||| Sbjct 31007788 CTTACCAGCAAAGATCAACCTCTGCTGATCAGGAAGAAGTCCTTCATTATTCTGGATCTT 31007847 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGC-CTG 82785 || ||||||||||| || || || ||||| | || | || || || || | | Sbjct 31007848 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAACTCGAGTGTGATGGTTTTTCTCCA 31007907 Query 82786 TCAACGTCTTTACAAATATCTGCAT 82810 | | ||||| |||||||||||||| Sbjct 31007908 TAAGGGTCTTCACAAATATCTGCAT 31007932 >seq1 Length=172151128 Score = 111 bits (122), Expect = 3e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| || || || || || || ||| | | | | || ||||| || || Sbjct 144045290 TGAAGGGTAGACTCCTTTTGAATGTTGTAGAAAGACAAAGTACGGCCATCTTCCAGCTGC 144045349 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| | ||| || | ||| ||||| |||||||||||||| || ||||| Sbjct 144045350 TTACCCGCAAAGATCAATCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 144045409 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| || | | | || || || || || Sbjct 144045410 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCTTGATGGTTTTTCCCGTA 144045469 Query 82788 AACGTCTTTACAAATATCTGCATTAT 82813 || ||||| ||||| |||||||| || Sbjct 144045470 AAGGTCTTCACAAAAATCTGCATCAT 144045495 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 || ||||| || || || || || || ||||| | | | | |||||||| || || || Sbjct 19506331 AGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGGCCGTCTTCCAGCTGCTTA 19506272 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 | |||||||| || || || | ||| ||| | |||||||||||||| || | ||| || Sbjct 19506271 C-AGCAAAGAGCAGCCTCTGCTAATCAGGACGGATTCCTTCCTTATCCTGGACCTTGGCC 19506213 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||| |||| | || || ||||| || || | || || ||||| || | | Sbjct 19506212 TTTACAGTTTCTGTAGTGTCCGAGGGTTCAACCTCGAGTGTGATGGTCTTCCCAATAAGG 19506153 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| |||||||| Sbjct 19506152 GTCTTCACAAAAGTCTGCATT 19506132 >seq16 Length=96704406 Score = 104 bits (114), Expect = 5e-17 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 || ||||| ||||| || || | || ||||| | | | | ||||| || ||||| Sbjct 4425989 AGGGTAGACTCTTTTTGAATGCTGTAGTCAGAGAAAGTATGGTCATCTTCCAGCTGTTTA 4425930 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| || || || ||||| ||||| |||| ||||||||| || |||| || Sbjct 4425929 CCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCTTTCCTTATCCTGGGTCTTGGCC 4425870 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||| | || || | ||| || |||| || || || || || || || Sbjct 4425869 TTTACATTTTC--TAGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTTCCCCGTAAAG 4425812 Query 82791 GTCTTTACAAA 82801 ||||| ||||| Sbjct 4425811 GTCTTCACAAA 4425801 >seq6 Length=146485248 Score = 100 bits (110), Expect = 6e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || || || || || || || ||||| | ||| | || |||||||| || || |||||| Sbjct 104811107 GACTCCTTTTGAATGTTGTAGTCAGACAAAATACAGCCATCTTCTAGCTGCTTGCCAGCA 104811048 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| | || || ||||| ||||| |||| ||||||||| || ||||| | |||||| Sbjct 104811047 AAGATCAACCTCTGCTGATCAGGAGGAATTCTTTCCTTATCCTGGATCTTGACCTTTACA 104810988 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 ||||| || || || ||||| || | | || || ||||| || | | |||| Sbjct 104810987 TTTTCTATAGTGTCCAAGGGTTCAACCCCAAGTGTGATGGTCTTCCCCATAATTCTCTTC 104810928 Query 82797 ACAAA 82801 ||||| Sbjct 104810927 ACAAA 104810923 >seq9 Length=107150856 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| || || || || || ||||| | | | | || ||||| || || Sbjct 72218630 TGAAGGGTAGACTCCTTTTGAGGGTTGTAGTCAGACAAAGTACAGCCATCTTCCAGCTGC 72218689 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||| | || || ||||| ||||| | |||||||||||| || ||||| Sbjct 72218690 TTTCCAGCAAAGATCAACCTCTGCTGATCAGGAGGAAGTCCTTCCTTATCCTGGATCTTG 72218749 Query 82728 GCTTTTACATTTTCAATCGTATC 82750 || ||||||||||| || || || Sbjct 72218750 GCCTTTACATTTTCTATAGTGTC 72218772 Score = 93.3 bits (102), Expect = 8e-14 Identities = 143/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 || ||||| || || || || || || ||||| | | | | | ||||| || || || Sbjct 86261822 AGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCGATCTTCCAGCTGCTTA 86261881 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| | || || ||||| |||| | |||||||||||| | |||| | Sbjct 86261882 CCAGCAAAGATCAACCTCTGCTGATCAGGAGA-AGTCCTTCCTTATCCTAGGTCTTGGAC 86261940 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| || || || || ||||| | || | || || | ||| ||||| | Sbjct 86261941 TTTACATTATCTATAGTGTCCGAGGGTTCATCCTCGAGCGTGATGGCCTTCCCTGTAAGG 86262000 Query 82791 GTCTTTACAAATATCTGCATTAT 82813 ||||| ||||| |||||||| || Sbjct 86262001 GTCTTCACAAAAATCTGCATCAT 86262023 >seq15 Length=89017189 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTA-CCGTCTTCTAGTTGTTTTCCAGCAAA 82678 || || || || ||||| ||| | ||| | | || ||||| || || || |||||||| Sbjct 12733286 TCCTTTTGAATGTTATAGTCAAA--GAAGTATGGCCATCTTCCAGCTGCTTACCAGCAAA 12733229 Query 82679 GATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 ||| || || || ||||| ||||| |||||||||||||| || |||| || |||||||| Sbjct 12733228 GATCAGCCTGTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTACATT 12733169 Query 82739 TTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 || | || || ||||| | | | || || ||||| || | | |||| || Sbjct 12733168 TTACACAGTGTCCAGGGGTTCAGCCTTGAGCGTGATGGTCTTCCCCATTAGGATCTTCAC 12733109 Query 82799 AAATATCTGCATT 82811 ||| ||||||||| Sbjct 12733108 AAAAATCTGCATT 12733096 >seq23 Length=89631738 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || ||||||||||| | || |||||||| ||||| |||||||||||||| || ||| Sbjct 69181451 TGCTTACCAGCAAAGATCAAGCTCTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 69181510 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || ||||||||||| || || || |||| || || | | || ||||| ||| Sbjct 69181511 TTGATCTTTACATTTTCTATAGTGTCCAAGAGTTCAACCTCGAGCATGATGGTCTTCCCT 69181570 Query 82785 GTCAACGTCTTTACAAATATCTGCATTAT 82813 | | |||| ||||| ||||||| || Sbjct 69181571 ATAAGGCTCTTCACAAAAGTCTGCATCAT 69181599 >seq17 Length=88915856 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/156 (73%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 82657 CTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTAT 82716 |||| || || || ||||||||||| || || || || || || || || || || |||| Sbjct 31247679 CTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTAT 31247738 Query 82717 CTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCG 82776 | || ||||| | ||||| || || || |||||| | || || || |||| || || | Sbjct 31247739 CCTGGATCTTGGTTTTTATGTTCTCCATGGTATCACTGGGCTCCACCTCCAGGGTGATGG 31247798 Query 82777 TC-TTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| |||| ||||||| || || ||||| Sbjct 31247799 TCTTTGCCAGTCAGGGTCTTTATGAAGATTAGCATT 31247834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981794731894959