Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq9 138 1e-27 seq17 120 3e-22 seq13 120 3e-22 seq4 113 4e-20 seq28 100 3e-16 >seq9 Length=107150856 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | ||||| ||||| |||| Sbjct 83841085 GGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCA-TCCTCCAGCTGTTTGC 83841143 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| || ||||||||||||||||| |||||| || Sbjct 83841144 CGGCGAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 83841203 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | |||| ||| ||||| ||||| | Sbjct 83841204 TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGG 83841263 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 83841264 TCTTCACGAAGATCTGCATG 83841283 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | ||||| | ||| |||| Sbjct 80898473 GGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCA-TCCTCCACCTGTTTGC 80898531 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || ||||||||||||||||| |||||| || Sbjct 80898532 CGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 80898591 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | |||| ||| ||||| ||||| | Sbjct 80898592 TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGG 80898651 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 80898652 TCTTCACGAAGATCTGCATG 80898671 >seq17 Length=88915856 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| | |||||||| || ||| | ||||| ||||| ||||| Sbjct 64220013 GGTGGACTCTTTCTGGGTGTTGTAATCAGACAGGGTGCAGCCATCCTCCAGCTGTTTGCC 64220072 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||| |||||||||||| |||||| ||| Sbjct 64220073 GGCAAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCCTTGTCTTGGATCTTGGCCTT 64220132 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | || || ||||||| || || | |||| ||| ||||| |||| || Sbjct 64220133 GACATTCTCGATGGTATCACTGGGCTCTACTTCAAGAGTGATGGTCTTGCCCATCAGGGT 64220192 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 64220193 CTTCACAAAGATCTGCATG 64220211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 133509 TCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCG 133568 || ||||||||||| || | ||||||| ||||||||| || |||||||| || || || Sbjct 31247681 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 31247740 Query 133569 GTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGT- 133627 |||||| || | | ||| | || || |||||||||| || | ||||| ||| Sbjct 31247741 TGGATCTTGGTTTTTATGTTCTCCATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 31247800 Query 133628 TTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| ||||| || |||| ||| || |||| Sbjct 31247801 TTTGCCAGTCAGGGTCTTTATGAAGATTAGCAT 31247833 >seq13 Length=116904986 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| | || ||| | | | ||||| |||| |||| Sbjct 35782759 GGTGGACTCTTTCTGGATGTTGTAGTGCAACAGGGTGCGGCCA-TCCTCCAGCTCTTTGC 35782817 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 || | || |||| ||||||||| || ||||||||||||||||| |||||| || Sbjct 35782818 TGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 35782877 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | |||| ||| ||||| ||||| | Sbjct 35782878 TGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCCGTCAGGG 35782937 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 35782938 TCTTCACAAAGATCTGCATG 35782957 >seq4 Length=164141553 Score = 113 bits (124), Expect = 4e-20 Identities = 145/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || ||| | ||||| ||||| ||||| Sbjct 128787383 GGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCAGCCATCCTCCAGCTGTTTGCC 128787324 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 | | || |||| | ||||||| || ||||||||||||||||| |||||| ||| Sbjct 128787323 T-CAAATATCAGCCTCAGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTT 128787265 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || || | |||| ||| ||||| |||| || Sbjct 128787264 GACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCCATCAGGGT 128787205 Query 133643 TTTTACGAAAATCTGCATG 133661 || | ||| |||| |||| Sbjct 128787204 CTTCAGGAAGATCTACATG 128787186 Score = 98.7 bits (108), Expect = 1e-15 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||| |||| || | || |||| ||||||||| || ||||||||||||||| Sbjct 149231696 TCCTCCAGCTGTTTGCTGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTG 149231755 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||| | |||| ||||||| || || | |||| | Sbjct 149231756 TCTTGGATCTTGGCCTTGACATTCTCGATGTTGTCACTGGGCTCGACCTCAAGAGTGATG 149231815 Query 133626 GTTTTGCCGGTCAGAGTTTTTAC----GAAAATCTGCATG 133661 || ||||| ||||| || || || ||| ||||||||| Sbjct 149231816 GTCTTGCCCGTCAGGGTCTTCACGAAGGAAGATCTGCATG 149231855 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 133467 GACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCG 133526 ||||||||||| || |||||||| | ||| | || || ||||||||||| || Sbjct 104846262 GACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCCAGCTGCTTGCCAGCA 104846203 Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC 133586 | |||| || |||||||| || |||||||| || || || |||||| || | Sbjct 104846202 AAGATGAACCTTTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCTTTCACG 104846143 Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646 | ||| | ||||| |||||||||| || | |||| ||||||| |||||| || || Sbjct 104846142 TTCTCGATGGTGTCACTGGGCTCCACCTCTAGAGTGATGGTTTTGTTGGTCAGGGTCTTC 104846083 Query 133647 ACGAAAATCTGCAT 133660 ||| || ||||| Sbjct 104846082 TTGAAGATTTGCAT 104846069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| || || || ||||| || || || | | | || || |||| Sbjct 18056566 ATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCA-TCTTCCAGCT 18056624 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || | || |||||| || ||||| || |||||||| || ||||| Sbjct 18056625 GCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT 18056684 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||| | ||| || || |||| |||| |||||| || | Sbjct 18056685 TGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTTCCCG 18056744 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || ||||||||||| Sbjct 18056745 TAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| || || || ||||| || || || | | | || || |||| Sbjct 99334579 ATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCA-TCTTCCAGCT 99334637 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || | || |||||| || ||||| || |||||||| || ||||| Sbjct 99334638 GCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT 99334697 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||| | ||| || || |||| |||| |||||| || | Sbjct 99334698 TGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTTCCCG 99334757 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || ||||||||||| Sbjct 99334758 TAAGGGTCTTCACAAAAATCTGCAT 99334782 >seq28 Length=148379591 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC 133517 |||| ||| |||| |||||| || |||||||| | ||| | || || |||||| Sbjct 136136148 TGTAGGGTCGACTTTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCCAGCTGC 136136207 Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577 |||| || | ||||||| |||||||||||| | ||||| || || || |||||| Sbjct 136136208 CTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGTGAATGCCCTCTTTATCCTGGATCTTG 136136267 Query 133578 TGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTC 133637 ||| | | || | || || ||||||||| || | ||||| ||| ||||||||| Sbjct 136136268 CCCTTCACATTCTTGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGGTCTTGCCGGTC 136136327 Query 133638 AGAGTTTTTACGAAAATCTGCAT 133660 || || || | ||| || ||||| Sbjct 136136328 AGGGTCTTCATGAAGATTTGCAT 136136350 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| || |||||||| || |||||||| | ||| || || || Sbjct 9098642 AAGTGCAGGGTTGAGTCTTTCTGGATGTTGTAATCAGAGAGGGTGCTGCCATCTTCCAGA 9098701 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || ||||||||| || ||| || || || ||| || || || |||| Sbjct 9098702 TGCTTGCCTGCA-AAATGAGCCTCTACTGATCAGGGGGAATGTACTCTTTATCCTGGATC 9098760 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | ||| | ||||| |||||||||| || | ||||| ||| |||||| Sbjct 9098761 TTGGCCTTCACGGTCTCGATAGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCG 9098820 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || || ||||| Sbjct 9098821 GTCAGGGTCTTCACAAAGATGTGCAT 9098846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483405203636440