Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1 190 2e-43 seq15 104 3e-17 >seq1 Length=172151128 Score = 190 bits (210), Expect = 2e-43 Identities = 595/917 (65%), Gaps = 11/917 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||| | | |||| ||| || | |||||||| || || ||| ||| Sbjct 129345073 CCAGGGCTTTACGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCGACATCCA 129345132 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || || | |||||| | | || |||| | | || || | Sbjct 129345133 TGTCAAACTTATTGGCAAAAAAGTGATGTTGGCGCAGCA---TCCAGCTCAAGTCACCAG 129345189 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || |||||||| || || | |||||| ||||| |||| || | Sbjct 129345190 CTCCGAAGACGCACACAGAGCGCACGTGGACTCCACCGCACGGTGGATAAGGGGCACCGT 129345249 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| |||||||| || ||||||| || || | |||||| | Sbjct 129345250 TGGAAACATCGCCTTCAAAGTACTGCCACTTGACAAACCTAGCAATGGCATTCATGTCAG 129345309 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||| ||||| | ||| || | | ||||| || | || | || || | | Sbjct 129345310 ACAAGTCATACTTATGGCTTGAGGGGAAAGAACCAGGGACTTCGGGGATCCTTTGGATGG 129345369 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| | | || ||||| || || || |||| | ||| |||||||||| ||| Sbjct 129345370 TGGCCCATAAGAACTCATCTGGGCTGTAGGTGTCCTGTGCCCATTCCATGAACTTT-TGA 129345428 Query 162419 CCGTTT-TATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 ||| ||| | || | || || || ||| | || | ||||| || || Sbjct 129345429 ATATTTCTATTTTCCAGCACATAGCCTACATATTCCCTACTGACCACGAAGTAGGCACTG 129345488 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCT---CTTTGTCTTGACCCGTGTTGACT 162534 || ||||| | || | | | | ||||||| ||||| || |||||| Sbjct 129345489 CCTGAAAAGAGAGGAGT---TTTGAGTGGGGGCTGTGCTTTGATCACTCCAGTGTTGGTC 129345545 Query 162535 ACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 | | | || || || | | | ||| || |||| || | ||| ||| || | Sbjct 129345546 AGCTTCCCATCGACAATGGCATATCTTTTTTTCCATCTCTCTTCCTTGTTGGGAGGCATT 129345605 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 | || || || || |||| || ||| || |||| | || || || ||| Sbjct 129345606 TTCTCAGTTTCCAGGTTGTTTTCCCCTATGAAGCATTTGAGCTTCCTGACAATTTCCAGA 129345665 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| || || || | || || ||||| || | || ||||| || | | Sbjct 129345666 TTGGTTTTAATAGGGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTGCATTC 129345725 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | || |||||| |||| | ||||| || || |||| || |||||||| || || || Sbjct 129345726 ATTCTGTACAGGTCCTTCATGCAGTTGAGGTCAGCCTTAACCCGACTCCAGGATGCATAA 129345785 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||||||| |||| ||||||||||| || || || || | || ||| | Sbjct 129345786 ACAACACTCTCCAACTGGCTGGCCACAAAGACATTATCAAAGCAGGATGCGATGCCCTGC 129345845 Query 162835 ACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGA 162894 || || | | || || ||||| || || ||||| | |||||| | ||||||| Sbjct 129345846 ACCGCGGCTAAAAAGGATTCCTCTGCTTTTCTGTCCACGTGAATGCAGTAGAAATTCTGA 129345905 Query 162895 GGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATA 162954 || | |||||||||||||| | || || | ||| || || ||||| || |||||||| Sbjct 129345906 GGCACATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTATGATGAACCACGATG 129345965 Query 162955 GAATACGCTATGGGGAA 162971 ||||| || || || || Sbjct 129345966 GAATATGCAATTGGAAA 129345982 >seq15 Length=89017189 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 171517 GTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACT 171576 ||| || |||||||||| || ||| || | ||| ||||| |||| | || |||||| | Sbjct 40019691 GTCAGTCACAGTCCCCAGGTATAAAACCTGGCAGATCACTTCCT---TCCCGACTTGAGT 40019747 Query 171577 TTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAAC 171636 ||| || ||||| || | || ||||| || || || |||||||| || ||| ||| Sbjct 40019748 TTTGGGGTCTTTGACCCGGAGGATGCTGGTGACGGACGTAGTCCCATTTGAATG--GAAG 40019805 Query 171637 GG--TTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCT 171694 | | | |||||||| || ||||| | || | | ||||| | || |||| ||| Sbjct 40019806 TGACTCTCGGTACTATTCTCAATTCCTGTCCCAGTGCCCTTCCAGGAGATGGCAGGGGCT 40019865 Query 171695 GGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || | ||||| ||||||||||| ||||||| Sbjct 40019866 GGGCGGGCAGTCGCAGAGCAAGTGATGTTTA 40019896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578413338337600