Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 3e-14 seq17 84.2 1e-11 >seq9 Length=107150856 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || | ||| |||||| || |||||||| || ||| Sbjct 80898444 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 80898503 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||| | | || |||| ||||| |||||||| |||| | |||||| || | || Sbjct 80898504 AGGGTGTGGCCATCCTCCACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 80898563 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| || | |||||| || | || || Sbjct 80898564 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCGAC 80898622 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758 |||| ||||| || || || || | || || || ||||||||||| ||||| || Sbjct 80898623 CTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT-GTTGGCGT 80898678 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || | ||| |||||| || |||||||| || ||| Sbjct 83841056 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 83841115 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||| | | || |||| ||||| ||||| || |||| | |||||| || | || Sbjct 83841116 AGGGTGTGGCCATCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 83841175 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| || | |||||| || | || || Sbjct 83841176 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCGAC 83841234 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758 |||| ||||| || || || || | || || || ||||||||||| ||||| || Sbjct 83841235 CTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT-GTTGGCGT 83841290 >seq17 Length=88915856 Score = 84.2 bits (92), Expect = 1e-11 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || | ||| |||||| || |||||||||| || Sbjct 64219984 CCACCCCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGAC 64220043 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||| | || |||| ||||| |||||||| |||| | |||||| || | || Sbjct 64220044 AGGGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 64220103 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| || | ||| || || | || || Sbjct 64220104 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTATCACTGGGCTCTAC 64220162 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758 |||| ||||| || || || | | || || |||||||||||||| ||||| || Sbjct 64220163 TTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT-GTTGGCGT 64220218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328693660307520