Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 127 5e-24 seq9 93.3 1e-13 seq16 86.0 1e-11 seq8 86.0 1e-11 >seq4 Length=164141553 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || |||||||| ||||| | || || ||| || ||| Sbjct 18056766 CAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 18056707 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||| || || || ||||||||| || || || Sbjct 18056706 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 18056647 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || |||||| |||||||||| | |||||| | || |||||| || Sbjct 18056646 AGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAACATC 18056587 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| ||||| ||||| ||||||||||| Sbjct 18056586 CAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTTCG 18056549 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || |||||||| ||||| | || || ||| || ||| Sbjct 99334779 CAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 99334720 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||| || || || ||||||||| || || || Sbjct 99334719 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 99334660 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || |||||| |||||||||| | |||||| | || |||||| || Sbjct 99334659 AGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAACATC 99334600 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| ||||| ||||| ||||||||||| Sbjct 99334599 CAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTTCG 99334562 Score = 102 bits (112), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAG-GAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||||||| || || || | | ||||||| ||||| | || | ||| || || Sbjct 31007929 CAGATATTTGTGAAGACCCTTATGGAGAAAAACCATCACACTCGAGTTTGAACCCTCGGA 31007870 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| |||||| ||||| || | || |||||| || | || || || Sbjct 31007869 CACTATAGAAAATGTAAAGGCCAAGATCCAGAATAATGAAGGACTTCTTCCTGATCAGCA 31007810 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || || |||||| |||||||||| | |||||| | || |||||| | Sbjct 31007809 GAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCTGTACTTTGTCTGACTACAACAT 31007750 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389 || | ||||||| ||||||||||| |||||||||| Sbjct 31007749 TCAAACGGAGTCTATCCTTCACCTTGTGTTGAGACTTC 31007712 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| ||||| |||||||| || |||| || ||||| | |||||| Sbjct 18056549 CGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTA 18056608 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || ||||| | || || ||| Sbjct 18056609 CGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGA 18056653 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| ||||| |||||||| || |||| || ||||| | |||||| Sbjct 99334562 CGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTA 99334621 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || ||||| | || || ||| Sbjct 99334622 CGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGA 99334666 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||||||||| ||||||| | || | || ||||||| |||||| | Sbjct 31007712 GAAGTCTCAACACAAGGTGAAGGATAGACTCCGTTTGAATGTTGTAGTCAGACAAAGTAC 31007771 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||| || || ||||| | || || ||| Sbjct 31007772 AGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGA 31007815 >seq9 Length=107150856 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| ||||| |||||||| || || || ||||||| |||||| | Sbjct 72218613 GAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAGGGTTGTAGTCAGACAAAGTAC 72218672 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||||||||| || ||||| | || || ||| Sbjct 72218673 AGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGA 72218716 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGA---GTAGACTCTTTCTGGACATTATAGTCAGCCAAA 204808 ||||||||||| ||||||||| || |||||||| || || | || ||||||| |||| Sbjct 86261798 CGAAGTCTCAACACAAGGTGAGGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAA 86261857 Query 204809 GTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || | | ||||||||||||||| || || ||||| | || || ||| Sbjct 86261858 GTACGGCGATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGA 86261905 >seq16 Length=96704406 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| ||||| |||| || ||| || ||||| | ||| |||||| Sbjct 4425816 ACGGGGAAAACCATCACACTGGAGGTTGAATCCTCGGACAC--TAGAAAATGTAAAGGCC 4425873 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||| || || || ||| ||||| || || || || || ||||| || || || Sbjct 4425874 AAGACCCAGGATAAGGAAAGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGGTAAA 4425933 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA- 206372 ||| ||||||||| ||||| | || |||| | | || ||||||||||| ||| | Sbjct 4425934 CAGCTGGAAGATGACCATACTTTCTCTGACTACAGCATTCAAAAAGAGTCTACCCTTTAG 4425993 Query 206373 CCTTGTTTTGAGACTTCG 206390 |||||| ||||||||||| Sbjct 4425994 CCTTGTGTTGAGACTTCG 4426011 >seq8 Length=167013402 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | | ||||||| |||||| Sbjct 14199141 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGGTGTAGTCAGACAAAGTA 14199082 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | | |||||||||||| || || || ||||| Sbjct 14199081 CAGCTATCTTCCAGCTGTTTACCAGCAAAGAT 14199050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181781718294101